Gene : Seita.3G245500 S. italica v2.2
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2455
Name:  ? Seita.3G245500 Secondary Identifier:  ? PAC:32712745
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7560 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G245500 0.5kb upstream 0.5kb upstream 5055 true scaffold_3: 21018650-21023704 Setaria italica
Seita.3G245500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21018650-21019149 Setaria italica
Seita.3G245500 0.5kb downstream 0.5kb downstream 5055 true scaffold_3: 21019150-21024204 Setaria italica
Seita.3G245500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21023705-21024204 Setaria italica
Seita.3G245500 1.0kb upstream 1.0kb upstream 5555 true scaffold_3: 21018150-21023704 Setaria italica
Seita.3G245500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21018150-21019149 Setaria italica
Seita.3G245500 1.0kb downstream 1.0kb downstream 5555 true scaffold_3: 21019150-21024704 Setaria italica
Seita.3G245500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21023705-21024704 Setaria italica
Seita.3G245500 2.0kb upstream 2.0kb upstream 6555 true scaffold_3: 21017150-21023704 Setaria italica
Seita.3G245500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21017150-21019149 Setaria italica
Seita.3G245500 2.0kb downstream 2.0kb downstream 6555 true scaffold_3: 21019150-21025704 Setaria italica
Seita.3G245500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21023705-21025704 Setaria italica
Seita.3G245500 5.0kb upstream 5.0kb upstream 9555 true scaffold_3: 21014150-21023704 Setaria italica
Seita.3G245500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21014150-21019149 Setaria italica
Seita.3G245500 5.0kb downstream 5.0kb downstream 9555 true scaffold_3: 21019150-21028704 Setaria italica
Seita.3G245500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21023705-21028704 Setaria italica
Seita.3G245500 10.0kb upstream 10.0kb upstream 14555 true scaffold_3: 21009150-21023704 Setaria italica
Seita.3G245500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21009150-21019149 Setaria italica
Seita.3G245500 10.0kb downstream 10.0kb downstream 14555 true scaffold_3: 21019150-21033704 Setaria italica
Seita.3G245500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21023705-21033704 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185439 5267 Panicoideae View MSA
124576691 5269 Grass View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.089        
cufflinks 4.289        
cufflinks 8.024        
cufflinks 15.234     High High
cufflinks 28.734     High High
cufflinks 4.137        
cufflinks 14.844     High High
cufflinks 13.853     High  
cufflinks 17.489     High High
cufflinks 2.644        
cufflinks 1.694        
cufflinks 0.567       Low
cufflinks 0.556       Low
cufflinks 5.943        
cufflinks 0.342       Low
cufflinks 11.628        
cufflinks 0.503       Low
cufflinks 1.998        
cufflinks 7.979        
cufflinks 0.581       Low

0 Strain