Gene : Seita.3G246500 S. italica v2.2
Defline:  (1 of 3) PTHR19847 - WD40 REPEAT PROTEIN Genomic Order:  2465
Name:  ? Seita.3G246500 Secondary Identifier:  ? PAC:32714195
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G246500 0.5kb upstream 0.5kb upstream 8574 true scaffold_3: 21152758-21161331 Setaria italica
Seita.3G246500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21152758-21153257 Setaria italica
Seita.3G246500 0.5kb downstream 0.5kb downstream 8574 true scaffold_3: 21153258-21161831 Setaria italica
Seita.3G246500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21161332-21161831 Setaria italica
Seita.3G246500 1.0kb upstream 1.0kb upstream 9074 true scaffold_3: 21152258-21161331 Setaria italica
Seita.3G246500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21152258-21153257 Setaria italica
Seita.3G246500 1.0kb downstream 1.0kb downstream 9074 true scaffold_3: 21153258-21162331 Setaria italica
Seita.3G246500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21161332-21162331 Setaria italica
Seita.3G246500 2.0kb upstream 2.0kb upstream 10074 true scaffold_3: 21151258-21161331 Setaria italica
Seita.3G246500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21151258-21153257 Setaria italica
Seita.3G246500 2.0kb downstream 2.0kb downstream 10074 true scaffold_3: 21153258-21163331 Setaria italica
Seita.3G246500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21161332-21163331 Setaria italica
Seita.3G246500 5.0kb upstream 5.0kb upstream 13074 true scaffold_3: 21148258-21161331 Setaria italica
Seita.3G246500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21148258-21153257 Setaria italica
Seita.3G246500 5.0kb downstream 5.0kb downstream 13074 true scaffold_3: 21153258-21166331 Setaria italica
Seita.3G246500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21161332-21166331 Setaria italica
Seita.3G246500 10.0kb upstream 10.0kb upstream 18074 true scaffold_3: 21143258-21161331 Setaria italica
Seita.3G246500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21143258-21153257 Setaria italica
Seita.3G246500 10.0kb downstream 10.0kb downstream 18074 true scaffold_3: 21153258-21171331 Setaria italica
Seita.3G246500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21161332-21171331 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183243 5267 Panicoideae View MSA
124575017 5269 Grass View MSA
122047753 5273 Angiosperm View MSA
121344393 5274 Embryophyte View MSA
123427446 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.138        
cufflinks 5.425        
cufflinks 6.949        
cufflinks 6.489        
cufflinks 6.866        
cufflinks 5.752        
cufflinks 7.065        
cufflinks 5.611        
cufflinks 7.156        
cufflinks 3.367       Low
cufflinks 5.117        
cufflinks 5.695        
cufflinks 5.825        
cufflinks 7.031        
cufflinks 7.599        
cufflinks 9.929       High
cufflinks 7.095        
cufflinks 5.903        
cufflinks 5.228        
cufflinks 7.265        

0 Strain