Gene : Seita.3G248500 S. italica v2.2
Defline:  (1 of 3) 1.8.4.12 - Peptide-methionine (R)-S-oxide reductase / Selenoprotein R Genomic Order:  2485
Name:  ? Seita.3G248500 Secondary Identifier:  ? PAC:32711495
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G248500 0.5kb upstream 0.5kb upstream 2812 true scaffold_3: 21314476-21317287 Setaria italica
Seita.3G248500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21316788-21317287 Setaria italica
Seita.3G248500 0.5kb downstream 0.5kb downstream 2812 true scaffold_3: 21313976-21316787 Setaria italica
Seita.3G248500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21313976-21314475 Setaria italica
Seita.3G248500 1.0kb upstream 1.0kb upstream 3312 true scaffold_3: 21314476-21317787 Setaria italica
Seita.3G248500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21316788-21317787 Setaria italica
Seita.3G248500 1.0kb downstream 1.0kb downstream 3312 true scaffold_3: 21313476-21316787 Setaria italica
Seita.3G248500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21313476-21314475 Setaria italica
Seita.3G248500 2.0kb upstream 2.0kb upstream 4312 true scaffold_3: 21314476-21318787 Setaria italica
Seita.3G248500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21316788-21318787 Setaria italica
Seita.3G248500 2.0kb downstream 2.0kb downstream 4312 true scaffold_3: 21312476-21316787 Setaria italica
Seita.3G248500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21312476-21314475 Setaria italica
Seita.3G248500 5.0kb upstream 5.0kb upstream 7312 true scaffold_3: 21314476-21321787 Setaria italica
Seita.3G248500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21316788-21321787 Setaria italica
Seita.3G248500 5.0kb downstream 5.0kb downstream 7312 true scaffold_3: 21309476-21316787 Setaria italica
Seita.3G248500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21309476-21314475 Setaria italica
Seita.3G248500 10.0kb upstream 10.0kb upstream 12312 true scaffold_3: 21314476-21326787 Setaria italica
Seita.3G248500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21316788-21326787 Setaria italica
Seita.3G248500 10.0kb downstream 10.0kb downstream 12312 true scaffold_3: 21304476-21316787 Setaria italica
Seita.3G248500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21304476-21314475 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175795 5267 Panicoideae View MSA
124576098 5269 Grass View MSA
122047974 5273 Angiosperm View MSA
121348855 5274 Embryophyte View MSA
123426618 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.549        
cufflinks 7.353        
cufflinks 56.874     High High
cufflinks 78.522     High High
cufflinks 61.576     High High
cufflinks 7.385        
cufflinks 20.301     High  
cufflinks 62.98     High High
cufflinks 33.917     High  
cufflinks 12.184        
cufflinks 5.247        
cufflinks 2.887       Low
cufflinks 4.032       Low
cufflinks 25.42     High  
cufflinks 2.451       Low
cufflinks 26.85     High  
cufflinks 4.101       Low
cufflinks 10.063        
cufflinks 61.141     High High
cufflinks 3.235       Low

0 Strain