Gene : Seita.3G248600 S. italica v2.2
Defline:  (1 of 1) PTHR13068:SF24 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR-LIKE PROTEIN BELAYA SMERT Genomic Order:  2486
Name:  ? Seita.3G248600 Secondary Identifier:  ? PAC:32711181
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G248600 0.5kb upstream 0.5kb upstream 1994 true scaffold_3: 21318861-21320854 Setaria italica
Seita.3G248600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21320355-21320854 Setaria italica
Seita.3G248600 0.5kb downstream 0.5kb downstream 1994 true scaffold_3: 21318361-21320354 Setaria italica
Seita.3G248600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21318361-21318860 Setaria italica
Seita.3G248600 1.0kb upstream 1.0kb upstream 2494 true scaffold_3: 21318861-21321354 Setaria italica
Seita.3G248600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21320355-21321354 Setaria italica
Seita.3G248600 1.0kb downstream 1.0kb downstream 2494 true scaffold_3: 21317861-21320354 Setaria italica
Seita.3G248600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21317861-21318860 Setaria italica
Seita.3G248600 2.0kb upstream 2.0kb upstream 3494 true scaffold_3: 21318861-21322354 Setaria italica
Seita.3G248600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21320355-21322354 Setaria italica
Seita.3G248600 2.0kb downstream 2.0kb downstream 3494 true scaffold_3: 21316861-21320354 Setaria italica
Seita.3G248600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21316861-21318860 Setaria italica
Seita.3G248600 5.0kb upstream 5.0kb upstream 6494 true scaffold_3: 21318861-21325354 Setaria italica
Seita.3G248600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21320355-21325354 Setaria italica
Seita.3G248600 5.0kb downstream 5.0kb downstream 6494 true scaffold_3: 21313861-21320354 Setaria italica
Seita.3G248600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21313861-21318860 Setaria italica
Seita.3G248600 10.0kb upstream 10.0kb upstream 11494 true scaffold_3: 21318861-21330354 Setaria italica
Seita.3G248600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21320355-21330354 Setaria italica
Seita.3G248600 10.0kb downstream 10.0kb downstream 11494 true scaffold_3: 21308861-21320354 Setaria italica
Seita.3G248600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21308861-21318860 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040971 5273 Angiosperm View MSA
122175099 5267 Panicoideae View MSA
124580695 5269 Grass View MSA
121347791 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.514        
cufflinks 7.157        
cufflinks 7.721        
cufflinks 4.897        
cufflinks 7.021        
cufflinks 6.562        
cufflinks 11.607       High
cufflinks 11.849       High
cufflinks 16.245     High High
cufflinks 2.92        
cufflinks 4.283        
cufflinks 1.435       Low
cufflinks 0.847       Low
cufflinks 8.15        
cufflinks 2.198        
cufflinks 11.188       High
cufflinks 1.853       Low
cufflinks 4.852        
cufflinks 6.913        
cufflinks 1.828       Low

0 Strain