Gene : Seita.3G249100 S. italica v2.2
Defline:  (1 of 1) PTHR24093:SF82 - CATION-TRANSPORTING ATPASE 13A1-RELATED Genomic Order:  2491
Name:  ? Seita.3G249100 Secondary Identifier:  ? PAC:32709901
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G249100 0.5kb upstream 0.5kb upstream 11139 true scaffold_3: 21372193-21383331 Setaria italica
Seita.3G249100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21372193-21372692 Setaria italica
Seita.3G249100 0.5kb downstream 0.5kb downstream 11139 true scaffold_3: 21372693-21383831 Setaria italica
Seita.3G249100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21383332-21383831 Setaria italica
Seita.3G249100 1.0kb upstream 1.0kb upstream 11639 true scaffold_3: 21371693-21383331 Setaria italica
Seita.3G249100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21371693-21372692 Setaria italica
Seita.3G249100 1.0kb downstream 1.0kb downstream 11639 true scaffold_3: 21372693-21384331 Setaria italica
Seita.3G249100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21383332-21384331 Setaria italica
Seita.3G249100 2.0kb upstream 2.0kb upstream 12639 true scaffold_3: 21370693-21383331 Setaria italica
Seita.3G249100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21370693-21372692 Setaria italica
Seita.3G249100 2.0kb downstream 2.0kb downstream 12639 true scaffold_3: 21372693-21385331 Setaria italica
Seita.3G249100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21383332-21385331 Setaria italica
Seita.3G249100 5.0kb upstream 5.0kb upstream 15639 true scaffold_3: 21367693-21383331 Setaria italica
Seita.3G249100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21367693-21372692 Setaria italica
Seita.3G249100 5.0kb downstream 5.0kb downstream 15639 true scaffold_3: 21372693-21388331 Setaria italica
Seita.3G249100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21383332-21388331 Setaria italica
Seita.3G249100 10.0kb upstream 10.0kb upstream 20639 true scaffold_3: 21362693-21383331 Setaria italica
Seita.3G249100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21362693-21372692 Setaria italica
Seita.3G249100 10.0kb downstream 10.0kb downstream 20639 true scaffold_3: 21372693-21393331 Setaria italica
Seita.3G249100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21383332-21393331 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026494 5273 Angiosperm View MSA
122198119 5267 Panicoideae View MSA
124580561 5269 Grass View MSA
121344570 5274 Embryophyte View MSA
123424459 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.592       High
cufflinks 6.51        
cufflinks 7.355        
cufflinks 6.522        
cufflinks 6.244        
cufflinks 6.591        
cufflinks 6.106        
cufflinks 5.684       Low
cufflinks 6.325        
cufflinks 5.092       Low
cufflinks 7.267        
cufflinks 6.29        
cufflinks 6.179        
cufflinks 6.45        
cufflinks 7.818       High
cufflinks 6.573        
cufflinks 6.478        
cufflinks 7.979       High
cufflinks 5.753       Low
cufflinks 7.056        

0 Strain