Gene : Seita.3G251400 S. italica v2.2
Defline:  (1 of 1) PTHR15615:SF20 - CYCLIN FAMILY PROTEIN-RELATED Genomic Order:  2514
Name:  ? Seita.3G251400 Secondary Identifier:  ? PAC:32710069
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G251400 0.5kb upstream 0.5kb upstream 3505 true scaffold_3: 21594832-21598336 Setaria italica
Seita.3G251400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21594832-21595331 Setaria italica
Seita.3G251400 0.5kb downstream 0.5kb downstream 3505 true scaffold_3: 21595332-21598836 Setaria italica
Seita.3G251400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21598337-21598836 Setaria italica
Seita.3G251400 1.0kb upstream 1.0kb upstream 4005 true scaffold_3: 21594332-21598336 Setaria italica
Seita.3G251400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21594332-21595331 Setaria italica
Seita.3G251400 1.0kb downstream 1.0kb downstream 4005 true scaffold_3: 21595332-21599336 Setaria italica
Seita.3G251400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21598337-21599336 Setaria italica
Seita.3G251400 2.0kb upstream 2.0kb upstream 5005 true scaffold_3: 21593332-21598336 Setaria italica
Seita.3G251400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21593332-21595331 Setaria italica
Seita.3G251400 2.0kb downstream 2.0kb downstream 5005 true scaffold_3: 21595332-21600336 Setaria italica
Seita.3G251400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21598337-21600336 Setaria italica
Seita.3G251400 5.0kb upstream 5.0kb upstream 8005 true scaffold_3: 21590332-21598336 Setaria italica
Seita.3G251400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21590332-21595331 Setaria italica
Seita.3G251400 5.0kb downstream 5.0kb downstream 8005 true scaffold_3: 21595332-21603336 Setaria italica
Seita.3G251400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21598337-21603336 Setaria italica
Seita.3G251400 10.0kb upstream 10.0kb upstream 13005 true scaffold_3: 21585332-21598336 Setaria italica
Seita.3G251400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21585332-21595331 Setaria italica
Seita.3G251400 10.0kb downstream 10.0kb downstream 13005 true scaffold_3: 21595332-21608336 Setaria italica
Seita.3G251400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21598337-21608336 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195511 5267 Panicoideae View MSA
124577459 5269 Grass View MSA
122044853 5273 Angiosperm View MSA
121349638 5274 Embryophyte View MSA
123428486 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.162        
cufflinks 20.05     High High
cufflinks 7.949       Low
cufflinks 7.61       Low
cufflinks 10.645     High  
cufflinks 19.863     High High
cufflinks 18.09     High  
cufflinks 19.332     High  
cufflinks 18.184     High  
cufflinks 14.105        
cufflinks 14.277     High  
cufflinks 18.563     High  
cufflinks 17.854     High  
cufflinks 6.542       Low
cufflinks 14.483     High  
cufflinks 15.192     High  
cufflinks 17.116     High  
cufflinks 12.78     High  
cufflinks 8.771       Low
cufflinks 19.296     High  

0 Strain