Gene : Seita.3G251700 S. italica v2.2
Defline:  (1 of 1) PTHR10906:SF2 - PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC Genomic Order:  2517
Name:  ? Seita.3G251700 Secondary Identifier:  ? PAC:32711581
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G251700 0.5kb upstream 0.5kb upstream 6951 true scaffold_3: 21613165-21620115 Setaria italica
Seita.3G251700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21613165-21613664 Setaria italica
Seita.3G251700 0.5kb downstream 0.5kb downstream 6951 true scaffold_3: 21613665-21620615 Setaria italica
Seita.3G251700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21620116-21620615 Setaria italica
Seita.3G251700 1.0kb upstream 1.0kb upstream 7451 true scaffold_3: 21612665-21620115 Setaria italica
Seita.3G251700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21612665-21613664 Setaria italica
Seita.3G251700 1.0kb downstream 1.0kb downstream 7451 true scaffold_3: 21613665-21621115 Setaria italica
Seita.3G251700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21620116-21621115 Setaria italica
Seita.3G251700 2.0kb upstream 2.0kb upstream 8451 true scaffold_3: 21611665-21620115 Setaria italica
Seita.3G251700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21611665-21613664 Setaria italica
Seita.3G251700 2.0kb downstream 2.0kb downstream 8451 true scaffold_3: 21613665-21622115 Setaria italica
Seita.3G251700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21620116-21622115 Setaria italica
Seita.3G251700 5.0kb upstream 5.0kb upstream 11451 true scaffold_3: 21608665-21620115 Setaria italica
Seita.3G251700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21608665-21613664 Setaria italica
Seita.3G251700 5.0kb downstream 5.0kb downstream 11451 true scaffold_3: 21613665-21625115 Setaria italica
Seita.3G251700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21620116-21625115 Setaria italica
Seita.3G251700 10.0kb upstream 10.0kb upstream 16451 true scaffold_3: 21603665-21620115 Setaria italica
Seita.3G251700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21603665-21613664 Setaria italica
Seita.3G251700 10.0kb downstream 10.0kb downstream 16451 true scaffold_3: 21613665-21630115 Setaria italica
Seita.3G251700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21620116-21630115 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185970 5267 Panicoideae View MSA
124577798 5269 Grass View MSA
122042778 5273 Angiosperm View MSA
121345832 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.387        
cufflinks 3.315        
cufflinks 3.348        
cufflinks 2.752       Low
cufflinks 2.351       Low
cufflinks 3.948        
cufflinks 4.04        
cufflinks 5.24       High
cufflinks 3.932        
cufflinks 4.003        
cufflinks 3.53        
cufflinks 3.82        
cufflinks 3.026        
cufflinks 3.254        
cufflinks 2.992        
cufflinks 5.467       High
cufflinks 3.193        
cufflinks 6.53       High
cufflinks 3.008        
cufflinks 2.783       Low

0 Strain