Gene : Seita.3G249600 S. italica v2.2
Defline:  (1 of 1) PF04536 - TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase (TPM) Genomic Order:  2496
Name:  ? Seita.3G249600 Secondary Identifier:  ? PAC:32713736
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5083 Setaria italica pathologic  
Sitalica PWY-6348 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G249600 0.5kb upstream 0.5kb upstream 2037 true scaffold_3: 21432189-21434225 Setaria italica
Seita.3G249600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21432189-21432688 Setaria italica
Seita.3G249600 0.5kb downstream 0.5kb downstream 2037 true scaffold_3: 21432689-21434725 Setaria italica
Seita.3G249600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21434226-21434725 Setaria italica
Seita.3G249600 1.0kb upstream 1.0kb upstream 2537 true scaffold_3: 21431689-21434225 Setaria italica
Seita.3G249600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21431689-21432688 Setaria italica
Seita.3G249600 1.0kb downstream 1.0kb downstream 2537 true scaffold_3: 21432689-21435225 Setaria italica
Seita.3G249600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21434226-21435225 Setaria italica
Seita.3G249600 2.0kb upstream 2.0kb upstream 3537 true scaffold_3: 21430689-21434225 Setaria italica
Seita.3G249600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21430689-21432688 Setaria italica
Seita.3G249600 2.0kb downstream 2.0kb downstream 3537 true scaffold_3: 21432689-21436225 Setaria italica
Seita.3G249600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21434226-21436225 Setaria italica
Seita.3G249600 5.0kb upstream 5.0kb upstream 6537 true scaffold_3: 21427689-21434225 Setaria italica
Seita.3G249600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21427689-21432688 Setaria italica
Seita.3G249600 5.0kb downstream 5.0kb downstream 6537 true scaffold_3: 21432689-21439225 Setaria italica
Seita.3G249600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21434226-21439225 Setaria italica
Seita.3G249600 10.0kb upstream 10.0kb upstream 11537 true scaffold_3: 21422689-21434225 Setaria italica
Seita.3G249600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21422689-21432688 Setaria italica
Seita.3G249600 10.0kb downstream 10.0kb downstream 11537 true scaffold_3: 21432689-21444225 Setaria italica
Seita.3G249600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21434226-21444225 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187864 5267 Panicoideae View MSA
124580769 5269 Grass View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.645        
cufflinks 17.178     High  
cufflinks 15.559     High  
cufflinks 26.665     High  
cufflinks 68.313     High  
cufflinks 12.164        
cufflinks 51.828     High  
cufflinks 66.364     High  
cufflinks 50.633     High  
cufflinks 6.69        
cufflinks 4.238        
cufflinks 0.034     Low Low
cufflinks 0.476        
cufflinks 18.384     High  
cufflinks 0.132       Low
cufflinks 65.378     High  
cufflinks 0.032     Low Low
cufflinks 3.494        
cufflinks 76.194     High  
cufflinks 0.034     Low Low

0 Strain