Gene : Seita.3G249900 S. italica v2.2
Defline:  (1 of 1) PF00575//PF03876 - S1 RNA binding domain (S1) // SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) Genomic Order:  2499
Name:  ? Seita.3G249900 Secondary Identifier:  ? PAC:32712645
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G249900 0.5kb upstream 0.5kb upstream 3567 true scaffold_3: 21448062-21451628 Setaria italica
Seita.3G249900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21448062-21448561 Setaria italica
Seita.3G249900 0.5kb downstream 0.5kb downstream 3567 true scaffold_3: 21448562-21452128 Setaria italica
Seita.3G249900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21451629-21452128 Setaria italica
Seita.3G249900 1.0kb upstream 1.0kb upstream 4067 true scaffold_3: 21447562-21451628 Setaria italica
Seita.3G249900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21447562-21448561 Setaria italica
Seita.3G249900 1.0kb downstream 1.0kb downstream 4067 true scaffold_3: 21448562-21452628 Setaria italica
Seita.3G249900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21451629-21452628 Setaria italica
Seita.3G249900 2.0kb upstream 2.0kb upstream 5067 true scaffold_3: 21446562-21451628 Setaria italica
Seita.3G249900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21446562-21448561 Setaria italica
Seita.3G249900 2.0kb downstream 2.0kb downstream 5067 true scaffold_3: 21448562-21453628 Setaria italica
Seita.3G249900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21451629-21453628 Setaria italica
Seita.3G249900 5.0kb upstream 5.0kb upstream 8067 true scaffold_3: 21443562-21451628 Setaria italica
Seita.3G249900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21443562-21448561 Setaria italica
Seita.3G249900 5.0kb downstream 5.0kb downstream 8067 true scaffold_3: 21448562-21456628 Setaria italica
Seita.3G249900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21451629-21456628 Setaria italica
Seita.3G249900 10.0kb upstream 10.0kb upstream 13067 true scaffold_3: 21438562-21451628 Setaria italica
Seita.3G249900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21438562-21448561 Setaria italica
Seita.3G249900 10.0kb downstream 10.0kb downstream 13067 true scaffold_3: 21448562-21461628 Setaria italica
Seita.3G249900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21451629-21461628 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192465 5267 Panicoideae View MSA
124570510 5269 Grass View MSA
122045109 5273 Angiosperm View MSA
121343808 5274 Embryophyte View MSA
123424516 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.365        
cufflinks 9.568       High
cufflinks 4.482       Low
cufflinks 5.677        
cufflinks 4.904       Low
cufflinks 9.489       High
cufflinks 6.719        
cufflinks 8.347        
cufflinks 5.781        
cufflinks 9.089        
cufflinks 6.201        
cufflinks 9.277        
cufflinks 8.729        
cufflinks 6.996        
cufflinks 9.625       High
cufflinks 5.845        
cufflinks 10.605       High
cufflinks 7.629        
cufflinks 5.844        
cufflinks 9.871       High

0 Strain