Gene : Seita.3G175600 S. italica v2.2
Defline:  (1 of 1) PTHR12532:SF0 - TRANSCRIPTIONAL REGULATORY PROTEIN HAH1-RELATED Genomic Order:  1756
Name:  ? Seita.3G175600 Secondary Identifier:  ? PAC:32710280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G175600 0.5kb upstream 0.5kb upstream 3666 true scaffold_3: 13012513-13016178 Setaria italica
Seita.3G175600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13015679-13016178 Setaria italica
Seita.3G175600 0.5kb downstream 0.5kb downstream 3666 true scaffold_3: 13012013-13015678 Setaria italica
Seita.3G175600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13012013-13012512 Setaria italica
Seita.3G175600 1.0kb upstream 1.0kb upstream 4166 true scaffold_3: 13012513-13016678 Setaria italica
Seita.3G175600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13015679-13016678 Setaria italica
Seita.3G175600 1.0kb downstream 1.0kb downstream 4166 true scaffold_3: 13011513-13015678 Setaria italica
Seita.3G175600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13011513-13012512 Setaria italica
Seita.3G175600 2.0kb upstream 2.0kb upstream 5166 true scaffold_3: 13012513-13017678 Setaria italica
Seita.3G175600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13015679-13017678 Setaria italica
Seita.3G175600 2.0kb downstream 2.0kb downstream 5166 true scaffold_3: 13010513-13015678 Setaria italica
Seita.3G175600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13010513-13012512 Setaria italica
Seita.3G175600 5.0kb upstream 5.0kb upstream 8166 true scaffold_3: 13012513-13020678 Setaria italica
Seita.3G175600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13015679-13020678 Setaria italica
Seita.3G175600 5.0kb downstream 5.0kb downstream 8166 true scaffold_3: 13007513-13015678 Setaria italica
Seita.3G175600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13007513-13012512 Setaria italica
Seita.3G175600 10.0kb upstream 10.0kb upstream 13166 true scaffold_3: 13012513-13025678 Setaria italica
Seita.3G175600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13015679-13025678 Setaria italica
Seita.3G175600 10.0kb downstream 10.0kb downstream 13166 true scaffold_3: 13002513-13015678 Setaria italica
Seita.3G175600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13002513-13012512 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187881 5267 Panicoideae View MSA
124579095 5269 Grass View MSA
122042716 5273 Angiosperm View MSA
121345418 5274 Embryophyte View MSA
123424346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.59        
cufflinks 1.923        
cufflinks 0.779        
cufflinks 0.47       Low
cufflinks 0.613       Low
cufflinks 1.893        
cufflinks 1.073        
cufflinks 2.333       High
cufflinks 2.091       High
cufflinks 0.988        
cufflinks 1.329        
cufflinks 2.096       High
cufflinks 1.082        
cufflinks 1.195        
cufflinks 1.267        
cufflinks 1.05        
cufflinks 1.981        
cufflinks 1.222        
cufflinks 0.48       Low
cufflinks 1.771        

0 Strain