Gene : Seita.3G175500 S. italica v2.2
Defline:  (1 of 2) PTHR13872:SF1 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B Genomic Order:  1755
Name:  ? Seita.3G175500 Secondary Identifier:  ? PAC:32712980
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G175500 0.5kb upstream 0.5kb upstream 6690 true scaffold_3: 13005628-13012317 Setaria italica
Seita.3G175500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13005628-13006127 Setaria italica
Seita.3G175500 0.5kb downstream 0.5kb downstream 6690 true scaffold_3: 13006128-13012817 Setaria italica
Seita.3G175500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13012318-13012817 Setaria italica
Seita.3G175500 1.0kb upstream 1.0kb upstream 7190 true scaffold_3: 13005128-13012317 Setaria italica
Seita.3G175500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13005128-13006127 Setaria italica
Seita.3G175500 1.0kb downstream 1.0kb downstream 7190 true scaffold_3: 13006128-13013317 Setaria italica
Seita.3G175500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13012318-13013317 Setaria italica
Seita.3G175500 2.0kb upstream 2.0kb upstream 8190 true scaffold_3: 13004128-13012317 Setaria italica
Seita.3G175500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13004128-13006127 Setaria italica
Seita.3G175500 2.0kb downstream 2.0kb downstream 8190 true scaffold_3: 13006128-13014317 Setaria italica
Seita.3G175500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13012318-13014317 Setaria italica
Seita.3G175500 5.0kb upstream 5.0kb upstream 11190 true scaffold_3: 13001128-13012317 Setaria italica
Seita.3G175500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13001128-13006127 Setaria italica
Seita.3G175500 5.0kb downstream 5.0kb downstream 11190 true scaffold_3: 13006128-13017317 Setaria italica
Seita.3G175500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13012318-13017317 Setaria italica
Seita.3G175500 10.0kb upstream 10.0kb upstream 16190 true scaffold_3: 12996128-13012317 Setaria italica
Seita.3G175500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12996128-13006127 Setaria italica
Seita.3G175500 10.0kb downstream 10.0kb downstream 16190 true scaffold_3: 13006128-13022317 Setaria italica
Seita.3G175500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13012318-13022317 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041451 5273 Angiosperm View MSA
122197856 5267 Panicoideae View MSA
124588615 5269 Grass View MSA
121345608 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.156     High High
cufflinks 31.421     High  
cufflinks 31.471     High  
cufflinks 20.415     High  
cufflinks 17.557     High Low
cufflinks 32.57     High High
cufflinks 29.43     High  
cufflinks 26.642     High  
cufflinks 16.329     High Low
cufflinks 18.536     High Low
cufflinks 26.128     High  
cufflinks 24.619     High  
cufflinks 24.532     High  
cufflinks 33.445     High High
cufflinks 31.028     High  
cufflinks 22.726     High  
cufflinks 29.484     High  
cufflinks 17.49     High Low
cufflinks 24.903     High  
cufflinks 28.83     High  

0 Strain