Gene : Seita.3G178700 S. italica v2.2
Genomic Order:  1787 Name:  ? Seita.3G178700
Secondary Identifier:  ? PAC:32713818
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G178700 0.5kb upstream 0.5kb upstream 4152 true scaffold_3: 13232211-13236362 Setaria italica
Seita.3G178700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13235863-13236362 Setaria italica
Seita.3G178700 0.5kb downstream 0.5kb downstream 4152 true scaffold_3: 13231711-13235862 Setaria italica
Seita.3G178700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13231711-13232210 Setaria italica
Seita.3G178700 1.0kb upstream 1.0kb upstream 4652 true scaffold_3: 13232211-13236862 Setaria italica
Seita.3G178700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13235863-13236862 Setaria italica
Seita.3G178700 1.0kb downstream 1.0kb downstream 4652 true scaffold_3: 13231211-13235862 Setaria italica
Seita.3G178700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13231211-13232210 Setaria italica
Seita.3G178700 2.0kb upstream 2.0kb upstream 5652 true scaffold_3: 13232211-13237862 Setaria italica
Seita.3G178700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13235863-13237862 Setaria italica
Seita.3G178700 2.0kb downstream 2.0kb downstream 5652 true scaffold_3: 13230211-13235862 Setaria italica
Seita.3G178700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13230211-13232210 Setaria italica
Seita.3G178700 5.0kb upstream 5.0kb upstream 8652 true scaffold_3: 13232211-13240862 Setaria italica
Seita.3G178700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13235863-13240862 Setaria italica
Seita.3G178700 5.0kb downstream 5.0kb downstream 8652 true scaffold_3: 13227211-13235862 Setaria italica
Seita.3G178700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13227211-13232210 Setaria italica
Seita.3G178700 10.0kb upstream 10.0kb upstream 13652 true scaffold_3: 13232211-13245862 Setaria italica
Seita.3G178700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13235863-13245862 Setaria italica
Seita.3G178700 10.0kb downstream 10.0kb downstream 13652 true scaffold_3: 13222211-13235862 Setaria italica
Seita.3G178700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13222211-13232210 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181873 5267 Panicoideae View MSA
124576099 5269 Grass View MSA
122043421 5273 Angiosperm View MSA
121348934 5274 Embryophyte View MSA
123381085 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.411        
cufflinks 8.279        
cufflinks 9.71        
cufflinks 9.703        
cufflinks 7.031        
cufflinks 7.769        
cufflinks 5.948       Low
cufflinks 5.689       Low
cufflinks 3.575       Low
cufflinks 6.142        
cufflinks 8.809        
cufflinks 9.374        
cufflinks 10.972        
cufflinks 7.426        
cufflinks 9.971        
cufflinks 7.655        
cufflinks 10.048        
cufflinks 16.145     High High
cufflinks 7.785        
cufflinks 7.617        

0 Strain