Gene : Seita.3G180900 S. italica v2.2
Defline:  (1 of 2) PTHR16517//PTHR16517:SF32 - TUBBY-RELATED Genomic Order:  1809
Name:  ? Seita.3G180900 Secondary Identifier:  ? PAC:32711482
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G180900 0.5kb upstream 0.5kb upstream 6494 true scaffold_3: 13662853-13669346 Setaria italica
Seita.3G180900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13668847-13669346 Setaria italica
Seita.3G180900 0.5kb downstream 0.5kb downstream 6494 true scaffold_3: 13662353-13668846 Setaria italica
Seita.3G180900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13662353-13662852 Setaria italica
Seita.3G180900 1.0kb upstream 1.0kb upstream 6994 true scaffold_3: 13662853-13669846 Setaria italica
Seita.3G180900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13668847-13669846 Setaria italica
Seita.3G180900 1.0kb downstream 1.0kb downstream 6994 true scaffold_3: 13661853-13668846 Setaria italica
Seita.3G180900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13661853-13662852 Setaria italica
Seita.3G180900 2.0kb upstream 2.0kb upstream 7994 true scaffold_3: 13662853-13670846 Setaria italica
Seita.3G180900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13668847-13670846 Setaria italica
Seita.3G180900 2.0kb downstream 2.0kb downstream 7994 true scaffold_3: 13660853-13668846 Setaria italica
Seita.3G180900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13660853-13662852 Setaria italica
Seita.3G180900 5.0kb upstream 5.0kb upstream 10994 true scaffold_3: 13662853-13673846 Setaria italica
Seita.3G180900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13668847-13673846 Setaria italica
Seita.3G180900 5.0kb downstream 5.0kb downstream 10994 true scaffold_3: 13657853-13668846 Setaria italica
Seita.3G180900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13657853-13662852 Setaria italica
Seita.3G180900 10.0kb upstream 10.0kb upstream 15994 true scaffold_3: 13662853-13678846 Setaria italica
Seita.3G180900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13668847-13678846 Setaria italica
Seita.3G180900 10.0kb downstream 10.0kb downstream 15994 true scaffold_3: 13652853-13668846 Setaria italica
Seita.3G180900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13652853-13662852 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181453 5267 Panicoideae View MSA
124569658 5269 Grass View MSA
122045291 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121310429 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.897        
cufflinks 3.094        
cufflinks 2.169       Low
cufflinks 2.568        
cufflinks 2.004       Low
cufflinks 4.086        
cufflinks 2.957        
cufflinks 3.385        
cufflinks 1.665       Low
cufflinks 4.331        
cufflinks 3.047        
cufflinks 5.63       High
cufflinks 6.374       High
cufflinks 2.527        
cufflinks 4.013        
cufflinks 3.267        
cufflinks 5.531       High
cufflinks 2.87        
cufflinks 3.46        
cufflinks 6.168       High

0 Strain