Gene : Seita.3G184300 S. italica v2.2
Defline:  (1 of 2) PTHR10302:SF6 - SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL Genomic Order:  1843
Name:  ? Seita.3G184300 Secondary Identifier:  ? PAC:32714599
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G184300 0.5kb upstream 0.5kb upstream 3470 true scaffold_3: 13942501-13945970 Setaria italica
Seita.3G184300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13942501-13943000 Setaria italica
Seita.3G184300 0.5kb downstream 0.5kb downstream 3470 true scaffold_3: 13943001-13946470 Setaria italica
Seita.3G184300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13945971-13946470 Setaria italica
Seita.3G184300 1.0kb upstream 1.0kb upstream 3970 true scaffold_3: 13942001-13945970 Setaria italica
Seita.3G184300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13942001-13943000 Setaria italica
Seita.3G184300 1.0kb downstream 1.0kb downstream 3970 true scaffold_3: 13943001-13946970 Setaria italica
Seita.3G184300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13945971-13946970 Setaria italica
Seita.3G184300 2.0kb upstream 2.0kb upstream 4970 true scaffold_3: 13941001-13945970 Setaria italica
Seita.3G184300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13941001-13943000 Setaria italica
Seita.3G184300 2.0kb downstream 2.0kb downstream 4970 true scaffold_3: 13943001-13947970 Setaria italica
Seita.3G184300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13945971-13947970 Setaria italica
Seita.3G184300 5.0kb upstream 5.0kb upstream 7970 true scaffold_3: 13938001-13945970 Setaria italica
Seita.3G184300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13938001-13943000 Setaria italica
Seita.3G184300 5.0kb downstream 5.0kb downstream 7970 true scaffold_3: 13943001-13950970 Setaria italica
Seita.3G184300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13945971-13950970 Setaria italica
Seita.3G184300 10.0kb upstream 10.0kb upstream 12970 true scaffold_3: 13933001-13945970 Setaria italica
Seita.3G184300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13933001-13943000 Setaria italica
Seita.3G184300 10.0kb downstream 10.0kb downstream 12970 true scaffold_3: 13943001-13955970 Setaria italica
Seita.3G184300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13945971-13955970 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188381 5267 Panicoideae View MSA
124573761 5269 Grass View MSA
122047632 5273 Angiosperm View MSA
121349645 5274 Embryophyte View MSA
123381385 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.84        
cufflinks 1.658       High
cufflinks 0.58        
cufflinks 0.344       Low
cufflinks 0.314       Low
cufflinks 1.44       High
cufflinks 0.733        
cufflinks 1.025        
cufflinks 0.867        
cufflinks 0.772        
cufflinks 0.788        
cufflinks 1.258        
cufflinks 0.689        
cufflinks 1.008        
cufflinks 1.022        
cufflinks 0.742        
cufflinks 1.619       High
cufflinks 0.686        
cufflinks 0.405       Low
cufflinks 1.462       High

0 Strain