Gene : Seita.3G183100 S. italica v2.2
Defline:  (1 of 1) PTHR12303:SF6 - UPF0586 PROTEIN C9ORF41 Genomic Order:  1831
Name:  ? Seita.3G183100 Secondary Identifier:  ? PAC:32710746
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G183100 0.5kb upstream 0.5kb upstream 7302 true scaffold_3: 13821569-13828870 Setaria italica
Seita.3G183100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 13828371-13828870 Setaria italica
Seita.3G183100 0.5kb downstream 0.5kb downstream 7302 true scaffold_3: 13821069-13828370 Setaria italica
Seita.3G183100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 13821069-13821568 Setaria italica
Seita.3G183100 1.0kb upstream 1.0kb upstream 7802 true scaffold_3: 13821569-13829370 Setaria italica
Seita.3G183100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 13828371-13829370 Setaria italica
Seita.3G183100 1.0kb downstream 1.0kb downstream 7802 true scaffold_3: 13820569-13828370 Setaria italica
Seita.3G183100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 13820569-13821568 Setaria italica
Seita.3G183100 2.0kb upstream 2.0kb upstream 8802 true scaffold_3: 13821569-13830370 Setaria italica
Seita.3G183100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 13828371-13830370 Setaria italica
Seita.3G183100 2.0kb downstream 2.0kb downstream 8802 true scaffold_3: 13819569-13828370 Setaria italica
Seita.3G183100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 13819569-13821568 Setaria italica
Seita.3G183100 5.0kb upstream 5.0kb upstream 11802 true scaffold_3: 13821569-13833370 Setaria italica
Seita.3G183100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 13828371-13833370 Setaria italica
Seita.3G183100 5.0kb downstream 5.0kb downstream 11802 true scaffold_3: 13816569-13828370 Setaria italica
Seita.3G183100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 13816569-13821568 Setaria italica
Seita.3G183100 10.0kb upstream 10.0kb upstream 16802 true scaffold_3: 13821569-13838370 Setaria italica
Seita.3G183100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 13828371-13838370 Setaria italica
Seita.3G183100 10.0kb downstream 10.0kb downstream 16802 true scaffold_3: 13811569-13828370 Setaria italica
Seita.3G183100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 13811569-13821568 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190676 5267 Panicoideae View MSA
124574379 5269 Grass View MSA
122046455 5273 Angiosperm View MSA
121344322 5274 Embryophyte View MSA
123425361 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.179        
cufflinks 6.73        
cufflinks 6.795        
cufflinks 5.786        
cufflinks 4.171       Low
cufflinks 6.134        
cufflinks 6.596        
cufflinks 6.441        
cufflinks 4.547       Low
cufflinks 5.702        
cufflinks 5.734        
cufflinks 8.663        
cufflinks 8.29        
cufflinks 6.464        
cufflinks 7.393        
cufflinks 8.876       High
cufflinks 8.786       High
cufflinks 11.608     High High
cufflinks 5.73        
cufflinks 7.684        

0 Strain