Gene : Seita.3G187000 S. italica v2.2
Defline:  (1 of 4) PF16709 - Fused Ig-PH domain of plant-specific actin-binding protein (SCAB-IgPH) Genomic Order:  1870
Name:  ? Seita.3G187000 Secondary Identifier:  ? PAC:32713532
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G187000 0.5kb upstream 0.5kb upstream 7800 true scaffold_3: 14173614-14181413 Setaria italica
Seita.3G187000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14180914-14181413 Setaria italica
Seita.3G187000 0.5kb downstream 0.5kb downstream 7800 true scaffold_3: 14173114-14180913 Setaria italica
Seita.3G187000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14173114-14173613 Setaria italica
Seita.3G187000 1.0kb upstream 1.0kb upstream 8300 true scaffold_3: 14173614-14181913 Setaria italica
Seita.3G187000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14180914-14181913 Setaria italica
Seita.3G187000 1.0kb downstream 1.0kb downstream 8300 true scaffold_3: 14172614-14180913 Setaria italica
Seita.3G187000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14172614-14173613 Setaria italica
Seita.3G187000 2.0kb upstream 2.0kb upstream 9300 true scaffold_3: 14173614-14182913 Setaria italica
Seita.3G187000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14180914-14182913 Setaria italica
Seita.3G187000 2.0kb downstream 2.0kb downstream 9300 true scaffold_3: 14171614-14180913 Setaria italica
Seita.3G187000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14171614-14173613 Setaria italica
Seita.3G187000 5.0kb upstream 5.0kb upstream 12300 true scaffold_3: 14173614-14185913 Setaria italica
Seita.3G187000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14180914-14185913 Setaria italica
Seita.3G187000 5.0kb downstream 5.0kb downstream 12300 true scaffold_3: 14168614-14180913 Setaria italica
Seita.3G187000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14168614-14173613 Setaria italica
Seita.3G187000 10.0kb upstream 10.0kb upstream 17300 true scaffold_3: 14173614-14190913 Setaria italica
Seita.3G187000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14180914-14190913 Setaria italica
Seita.3G187000 10.0kb downstream 10.0kb downstream 17300 true scaffold_3: 14163614-14180913 Setaria italica
Seita.3G187000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14163614-14173613 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182648 5267 Panicoideae View MSA
124579194 5269 Grass View MSA
122044281 5273 Angiosperm View MSA
121310265 5274 Embryophyte View MSA
123347803 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.488       High
cufflinks 9.567        
cufflinks 13.282     High High
cufflinks 10.778        
cufflinks 8.46       Low
cufflinks 10.705        
cufflinks 10.77        
cufflinks 12.565        
cufflinks 10.0        
cufflinks 7.256       Low
cufflinks 10.499        
cufflinks 12.336        
cufflinks 10.236        
cufflinks 11.276        
cufflinks 11.062        
cufflinks 13.42     High High
cufflinks 12.783        
cufflinks 11.536     High  
cufflinks 9.684        
cufflinks 11.475        

0 Strain