Gene : Seita.3G187900 S. italica v2.2
Genomic Order:  1879 Name:  ? Seita.3G187900
Secondary Identifier:  ? PAC:32713433
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G187900 0.5kb upstream 0.5kb upstream 3560 true scaffold_3: 14236270-14239829 Setaria italica
Seita.3G187900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14236270-14236769 Setaria italica
Seita.3G187900 0.5kb downstream 0.5kb downstream 3560 true scaffold_3: 14236770-14240329 Setaria italica
Seita.3G187900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14239830-14240329 Setaria italica
Seita.3G187900 1.0kb upstream 1.0kb upstream 4060 true scaffold_3: 14235770-14239829 Setaria italica
Seita.3G187900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14235770-14236769 Setaria italica
Seita.3G187900 1.0kb downstream 1.0kb downstream 4060 true scaffold_3: 14236770-14240829 Setaria italica
Seita.3G187900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14239830-14240829 Setaria italica
Seita.3G187900 2.0kb upstream 2.0kb upstream 5060 true scaffold_3: 14234770-14239829 Setaria italica
Seita.3G187900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14234770-14236769 Setaria italica
Seita.3G187900 2.0kb downstream 2.0kb downstream 5060 true scaffold_3: 14236770-14241829 Setaria italica
Seita.3G187900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14239830-14241829 Setaria italica
Seita.3G187900 5.0kb upstream 5.0kb upstream 8060 true scaffold_3: 14231770-14239829 Setaria italica
Seita.3G187900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14231770-14236769 Setaria italica
Seita.3G187900 5.0kb downstream 5.0kb downstream 8060 true scaffold_3: 14236770-14244829 Setaria italica
Seita.3G187900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14239830-14244829 Setaria italica
Seita.3G187900 10.0kb upstream 10.0kb upstream 13060 true scaffold_3: 14226770-14239829 Setaria italica
Seita.3G187900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14226770-14236769 Setaria italica
Seita.3G187900 10.0kb downstream 10.0kb downstream 13060 true scaffold_3: 14236770-14249829 Setaria italica
Seita.3G187900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14239830-14249829 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026569 5273 Angiosperm View MSA
122181454 5267 Panicoideae View MSA
124577465 5269 Grass View MSA
121346069 5274 Embryophyte View MSA
123380318 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.597        
cufflinks 2.407        
cufflinks 25.44     High High
cufflinks 24.359     High High
cufflinks 14.601     High  
cufflinks 2.428        
cufflinks 12.634        
cufflinks 11.177        
cufflinks 4.731        
cufflinks 2.173        
cufflinks 1.801       Low
cufflinks 1.77       Low
cufflinks 1.995        
cufflinks 23.273     High High
cufflinks 1.675       Low
cufflinks 20.946     High High
cufflinks 2.26        
cufflinks 10.216        
cufflinks 36.384     High High
cufflinks 1.961        

0 Strain