Gene : Seita.3G187700 S. italica v2.2
Defline:  (1 of 2) PF04410 - Gar1/Naf1 RNA binding region (Gar1) Genomic Order:  1877
Name:  ? Seita.3G187700 Secondary Identifier:  ? PAC:32710355
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G187700 0.5kb upstream 0.5kb upstream 4085 true scaffold_3: 14227371-14231455 Setaria italica
Seita.3G187700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14227371-14227870 Setaria italica
Seita.3G187700 0.5kb downstream 0.5kb downstream 4085 true scaffold_3: 14227871-14231955 Setaria italica
Seita.3G187700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14231456-14231955 Setaria italica
Seita.3G187700 1.0kb upstream 1.0kb upstream 4585 true scaffold_3: 14226871-14231455 Setaria italica
Seita.3G187700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14226871-14227870 Setaria italica
Seita.3G187700 1.0kb downstream 1.0kb downstream 4585 true scaffold_3: 14227871-14232455 Setaria italica
Seita.3G187700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14231456-14232455 Setaria italica
Seita.3G187700 2.0kb upstream 2.0kb upstream 5585 true scaffold_3: 14225871-14231455 Setaria italica
Seita.3G187700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14225871-14227870 Setaria italica
Seita.3G187700 2.0kb downstream 2.0kb downstream 5585 true scaffold_3: 14227871-14233455 Setaria italica
Seita.3G187700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14231456-14233455 Setaria italica
Seita.3G187700 5.0kb upstream 5.0kb upstream 8585 true scaffold_3: 14222871-14231455 Setaria italica
Seita.3G187700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14222871-14227870 Setaria italica
Seita.3G187700 5.0kb downstream 5.0kb downstream 8585 true scaffold_3: 14227871-14236455 Setaria italica
Seita.3G187700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14231456-14236455 Setaria italica
Seita.3G187700 10.0kb upstream 10.0kb upstream 13585 true scaffold_3: 14217871-14231455 Setaria italica
Seita.3G187700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14217871-14227870 Setaria italica
Seita.3G187700 10.0kb downstream 10.0kb downstream 13585 true scaffold_3: 14227871-14241455 Setaria italica
Seita.3G187700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14231456-14241455 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041036 5273 Angiosperm View MSA
122185999 5267 Panicoideae View MSA
124589364 5269 Grass View MSA
121343792 5274 Embryophyte View MSA
123424387 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.023        
cufflinks 13.33     High High
cufflinks 8.334        
cufflinks 4.932       Low
cufflinks 5.944        
cufflinks 14.303     High High
cufflinks 7.088        
cufflinks 6.146        
cufflinks 8.352        
cufflinks 5.8       Low
cufflinks 10.169        
cufflinks 7.639        
cufflinks 6.694        
cufflinks 10.169        
cufflinks 10.698        
cufflinks 5.11       Low
cufflinks 10.336        
cufflinks 8.55        
cufflinks 5.341       Low
cufflinks 9.737        

0 Strain