Gene : Seita.3G192300 S. italica v2.2
Defline:  (1 of 12) KOG1546 - Metacaspase involved in regulation of apoptosis Genomic Order:  1923
Name:  ? Seita.3G192300 Secondary Identifier:  ? PAC:32711623
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G192300 0.5kb upstream 0.5kb upstream 2776 true scaffold_3: 14588203-14590978 Setaria italica
Seita.3G192300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14588203-14588702 Setaria italica
Seita.3G192300 0.5kb downstream 0.5kb downstream 2776 true scaffold_3: 14588703-14591478 Setaria italica
Seita.3G192300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14590979-14591478 Setaria italica
Seita.3G192300 1.0kb upstream 1.0kb upstream 3276 true scaffold_3: 14587703-14590978 Setaria italica
Seita.3G192300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14587703-14588702 Setaria italica
Seita.3G192300 1.0kb downstream 1.0kb downstream 3276 true scaffold_3: 14588703-14591978 Setaria italica
Seita.3G192300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14590979-14591978 Setaria italica
Seita.3G192300 2.0kb upstream 2.0kb upstream 4276 true scaffold_3: 14586703-14590978 Setaria italica
Seita.3G192300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14586703-14588702 Setaria italica
Seita.3G192300 2.0kb downstream 2.0kb downstream 4276 true scaffold_3: 14588703-14592978 Setaria italica
Seita.3G192300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14590979-14592978 Setaria italica
Seita.3G192300 5.0kb upstream 5.0kb upstream 7276 true scaffold_3: 14583703-14590978 Setaria italica
Seita.3G192300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14583703-14588702 Setaria italica
Seita.3G192300 5.0kb downstream 5.0kb downstream 7276 true scaffold_3: 14588703-14595978 Setaria italica
Seita.3G192300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14590979-14595978 Setaria italica
Seita.3G192300 10.0kb upstream 10.0kb upstream 12276 true scaffold_3: 14578703-14590978 Setaria italica
Seita.3G192300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14578703-14588702 Setaria italica
Seita.3G192300 10.0kb downstream 10.0kb downstream 12276 true scaffold_3: 14588703-14600978 Setaria italica
Seita.3G192300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14590979-14600978 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186196 5267 Panicoideae View MSA
124584743 5269 Grass View MSA
122044539 5273 Angiosperm View MSA
121348821 5274 Embryophyte View MSA
123426896 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.749     High  
cufflinks 7.592        
cufflinks 2.88       Low
cufflinks 3.507       Low
cufflinks 4.766       Low
cufflinks 5.968        
cufflinks 12.814        
cufflinks 7.427        
cufflinks 12.709     High  
cufflinks 19.151     High High
cufflinks 22.486     High High
cufflinks 10.417        
cufflinks 12.358        
cufflinks 6.237        
cufflinks 9.644        
cufflinks 11.841        
cufflinks 8.345        
cufflinks 20.887     High High
cufflinks 7.285        
cufflinks 11.733        

0 Strain