Gene : Seita.3G193000 S. italica v2.2
Defline:  (1 of 1) PTHR11728//PTHR11728:SF14 - GLYCEROL-3-PHOSPHATE DEHYDROGENASE Genomic Order:  1930
Name:  ? Seita.3G193000 Secondary Identifier:  ? PAC:32709836
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6118 Setaria italica pathologic  
Sitalica PWY-7411 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G193000 0.5kb upstream 0.5kb upstream 3852 true scaffold_3: 14633155-14637006 Setaria italica
Seita.3G193000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14636507-14637006 Setaria italica
Seita.3G193000 0.5kb downstream 0.5kb downstream 3852 true scaffold_3: 14632655-14636506 Setaria italica
Seita.3G193000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14632655-14633154 Setaria italica
Seita.3G193000 1.0kb upstream 1.0kb upstream 4352 true scaffold_3: 14633155-14637506 Setaria italica
Seita.3G193000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14636507-14637506 Setaria italica
Seita.3G193000 1.0kb downstream 1.0kb downstream 4352 true scaffold_3: 14632155-14636506 Setaria italica
Seita.3G193000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14632155-14633154 Setaria italica
Seita.3G193000 2.0kb upstream 2.0kb upstream 5352 true scaffold_3: 14633155-14638506 Setaria italica
Seita.3G193000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14636507-14638506 Setaria italica
Seita.3G193000 2.0kb downstream 2.0kb downstream 5352 true scaffold_3: 14631155-14636506 Setaria italica
Seita.3G193000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14631155-14633154 Setaria italica
Seita.3G193000 5.0kb upstream 5.0kb upstream 8352 true scaffold_3: 14633155-14641506 Setaria italica
Seita.3G193000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14636507-14641506 Setaria italica
Seita.3G193000 5.0kb downstream 5.0kb downstream 8352 true scaffold_3: 14628155-14636506 Setaria italica
Seita.3G193000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14628155-14633154 Setaria italica
Seita.3G193000 10.0kb upstream 10.0kb upstream 13352 true scaffold_3: 14633155-14646506 Setaria italica
Seita.3G193000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14636507-14646506 Setaria italica
Seita.3G193000 10.0kb downstream 10.0kb downstream 13352 true scaffold_3: 14623155-14636506 Setaria italica
Seita.3G193000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14623155-14633154 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993588 5273 Angiosperm View MSA
122196397 5267 Panicoideae View MSA
124579945 5269 Grass View MSA
121349677 5274 Embryophyte View MSA
123381397 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.255        
cufflinks 1.271       Low
cufflinks 3.443        
cufflinks 5.709        
cufflinks 9.053        
cufflinks 1.749       Low
cufflinks 8.87        
cufflinks 7.227        
cufflinks 15.608     High High
cufflinks 9.141        
cufflinks 9.692        
cufflinks 10.961        
cufflinks 9.177        
cufflinks 21.737     High High
cufflinks 8.429        
cufflinks 1.733       Low
cufflinks 9.233        
cufflinks 4.074        
cufflinks 3.314        
cufflinks 6.592        

0 Strain