Gene : Seita.3G195200 S. italica v2.2
Defline:  (1 of 1) 5.4.3.8 - Glutamate-1-semialdehyde 2,1-aminomutase / Glutamate-1-semialdehyde aminotransferase Genomic Order:  1952
Name:  ? Seita.3G195200 Secondary Identifier:  ? PAC:32713091
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5188 Setaria italica pathologic  
Sitalica PWY-5918 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G195200 0.5kb upstream 0.5kb upstream 3454 true scaffold_3: 14846450-14849903 Setaria italica
Seita.3G195200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14846450-14846949 Setaria italica
Seita.3G195200 0.5kb downstream 0.5kb downstream 3454 true scaffold_3: 14846950-14850403 Setaria italica
Seita.3G195200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14849904-14850403 Setaria italica
Seita.3G195200 1.0kb upstream 1.0kb upstream 3954 true scaffold_3: 14845950-14849903 Setaria italica
Seita.3G195200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14845950-14846949 Setaria italica
Seita.3G195200 1.0kb downstream 1.0kb downstream 3954 true scaffold_3: 14846950-14850903 Setaria italica
Seita.3G195200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14849904-14850903 Setaria italica
Seita.3G195200 2.0kb upstream 2.0kb upstream 4954 true scaffold_3: 14844950-14849903 Setaria italica
Seita.3G195200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14844950-14846949 Setaria italica
Seita.3G195200 2.0kb downstream 2.0kb downstream 4954 true scaffold_3: 14846950-14851903 Setaria italica
Seita.3G195200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14849904-14851903 Setaria italica
Seita.3G195200 5.0kb upstream 5.0kb upstream 7954 true scaffold_3: 14841950-14849903 Setaria italica
Seita.3G195200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14841950-14846949 Setaria italica
Seita.3G195200 5.0kb downstream 5.0kb downstream 7954 true scaffold_3: 14846950-14854903 Setaria italica
Seita.3G195200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14849904-14854903 Setaria italica
Seita.3G195200 10.0kb upstream 10.0kb upstream 12954 true scaffold_3: 14836950-14849903 Setaria italica
Seita.3G195200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14836950-14846949 Setaria italica
Seita.3G195200 10.0kb downstream 10.0kb downstream 12954 true scaffold_3: 14846950-14859903 Setaria italica
Seita.3G195200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14849904-14859903 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179539 5267 Panicoideae View MSA
124575850 5269 Grass View MSA
122042723 5273 Angiosperm View MSA
121344584 5274 Embryophyte View MSA
123423890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.37     High  
cufflinks 51.573     High  
cufflinks 12.098     High Low
cufflinks 7.459       Low
cufflinks 71.442     High  
cufflinks 48.856     High  
cufflinks 115.1     High High
cufflinks 124.599     High High
cufflinks 315.784     High High
cufflinks 33.873     High  
cufflinks 47.7     High  
cufflinks 15.444     High  
cufflinks 12.257       Low
cufflinks 25.673     High  
cufflinks 16.964     High  
cufflinks 52.158     High  
cufflinks 15.204     High  
cufflinks 20.818     High  
cufflinks 13.896     High  
cufflinks 16.935     High  

0 Strain