Gene : Seita.3G193300 S. italica v2.2
Defline:  (1 of 4) PTHR23334 - CCAAT/ENHANCER BINDING PROTEIN Genomic Order:  1933
Name:  ? Seita.3G193300 Secondary Identifier:  ? PAC:32711386
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G193300 0.5kb upstream 0.5kb upstream 4278 true scaffold_3: 14669881-14674158 Setaria italica
Seita.3G193300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14669881-14670380 Setaria italica
Seita.3G193300 0.5kb downstream 0.5kb downstream 4278 true scaffold_3: 14670381-14674658 Setaria italica
Seita.3G193300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14674159-14674658 Setaria italica
Seita.3G193300 1.0kb upstream 1.0kb upstream 4778 true scaffold_3: 14669381-14674158 Setaria italica
Seita.3G193300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14669381-14670380 Setaria italica
Seita.3G193300 1.0kb downstream 1.0kb downstream 4778 true scaffold_3: 14670381-14675158 Setaria italica
Seita.3G193300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14674159-14675158 Setaria italica
Seita.3G193300 2.0kb upstream 2.0kb upstream 5778 true scaffold_3: 14668381-14674158 Setaria italica
Seita.3G193300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14668381-14670380 Setaria italica
Seita.3G193300 2.0kb downstream 2.0kb downstream 5778 true scaffold_3: 14670381-14676158 Setaria italica
Seita.3G193300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14674159-14676158 Setaria italica
Seita.3G193300 5.0kb upstream 5.0kb upstream 8778 true scaffold_3: 14665381-14674158 Setaria italica
Seita.3G193300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14665381-14670380 Setaria italica
Seita.3G193300 5.0kb downstream 5.0kb downstream 8778 true scaffold_3: 14670381-14679158 Setaria italica
Seita.3G193300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14674159-14679158 Setaria italica
Seita.3G193300 10.0kb upstream 10.0kb upstream 13778 true scaffold_3: 14660381-14674158 Setaria italica
Seita.3G193300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14660381-14670380 Setaria italica
Seita.3G193300 10.0kb downstream 10.0kb downstream 13778 true scaffold_3: 14670381-14684158 Setaria italica
Seita.3G193300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14674159-14684158 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176775 5267 Panicoideae View MSA
124577744 5269 Grass View MSA
122050154 5273 Angiosperm View MSA
121349674 5274 Embryophyte View MSA
123381395 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.237       Low
cufflinks 2.264        
cufflinks 1.579        
cufflinks 1.68        
cufflinks 1.622        
cufflinks 2.493        
cufflinks 1.453        
cufflinks 1.049       Low
cufflinks 2.399        
cufflinks 1.434        
cufflinks 1.157       Low
cufflinks 2.011        
cufflinks 2.919       High
cufflinks 4.074       High
cufflinks 4.445       High
cufflinks 1.042       Low
cufflinks 2.737        
cufflinks 1.416        
cufflinks 1.823        
cufflinks 2.231        

0 Strain