Gene : Seita.3G197500 S. italica v2.2
Defline:  (1 of 1) PTHR24349:SF88 - SERINE/THREONINE-PROTEIN KINASE CG17528 Genomic Order:  1975
Name:  ? Seita.3G197500 Secondary Identifier:  ? PAC:32713166
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G197500 0.5kb upstream 0.5kb upstream 4735 true scaffold_3: 14971238-14975972 Setaria italica
Seita.3G197500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14971238-14971737 Setaria italica
Seita.3G197500 0.5kb downstream 0.5kb downstream 4735 true scaffold_3: 14971738-14976472 Setaria italica
Seita.3G197500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14975973-14976472 Setaria italica
Seita.3G197500 1.0kb upstream 1.0kb upstream 5235 true scaffold_3: 14970738-14975972 Setaria italica
Seita.3G197500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14970738-14971737 Setaria italica
Seita.3G197500 1.0kb downstream 1.0kb downstream 5235 true scaffold_3: 14971738-14976972 Setaria italica
Seita.3G197500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14975973-14976972 Setaria italica
Seita.3G197500 2.0kb upstream 2.0kb upstream 6235 true scaffold_3: 14969738-14975972 Setaria italica
Seita.3G197500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14969738-14971737 Setaria italica
Seita.3G197500 2.0kb downstream 2.0kb downstream 6235 true scaffold_3: 14971738-14977972 Setaria italica
Seita.3G197500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14975973-14977972 Setaria italica
Seita.3G197500 5.0kb upstream 5.0kb upstream 9235 true scaffold_3: 14966738-14975972 Setaria italica
Seita.3G197500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14966738-14971737 Setaria italica
Seita.3G197500 5.0kb downstream 5.0kb downstream 9235 true scaffold_3: 14971738-14980972 Setaria italica
Seita.3G197500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14975973-14980972 Setaria italica
Seita.3G197500 10.0kb upstream 10.0kb upstream 14235 true scaffold_3: 14961738-14975972 Setaria italica
Seita.3G197500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14961738-14971737 Setaria italica
Seita.3G197500 10.0kb downstream 10.0kb downstream 14235 true scaffold_3: 14971738-14985972 Setaria italica
Seita.3G197500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14975973-14985972 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192580 5267 Panicoideae View MSA
124575613 5269 Grass View MSA
122049128 5273 Angiosperm View MSA
121348510 5274 Embryophyte View MSA
123380889 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.018        
cufflinks 0.339        
cufflinks 0.15       Low
cufflinks 0.166       Low
cufflinks 0.287        
cufflinks 0.378        
cufflinks 0.39        
cufflinks 0.184        
cufflinks 0.188        
cufflinks 1.497        
cufflinks 1.932        
cufflinks 7.065       High
cufflinks 5.827       High
cufflinks 0.189        
cufflinks 16.164     High High
cufflinks 0.372        
cufflinks 6.571       High
cufflinks 0.36        
cufflinks 0.285        
cufflinks 15.563     High High

0 Strain