Gene : Seita.3G198200 S. italica v2.2
Defline:  (1 of 1) PTHR20902 - 41-2 PROTEIN ANTIGEN-RELATED Genomic Order:  1982
Name:  ? Seita.3G198200 Secondary Identifier:  ? PAC:32712395
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G198200 0.5kb upstream 0.5kb upstream 5089 true scaffold_3: 15019303-15024391 Setaria italica
Seita.3G198200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 15023892-15024391 Setaria italica
Seita.3G198200 0.5kb downstream 0.5kb downstream 5089 true scaffold_3: 15018803-15023891 Setaria italica
Seita.3G198200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 15018803-15019302 Setaria italica
Seita.3G198200 1.0kb upstream 1.0kb upstream 5589 true scaffold_3: 15019303-15024891 Setaria italica
Seita.3G198200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 15023892-15024891 Setaria italica
Seita.3G198200 1.0kb downstream 1.0kb downstream 5589 true scaffold_3: 15018303-15023891 Setaria italica
Seita.3G198200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 15018303-15019302 Setaria italica
Seita.3G198200 2.0kb upstream 2.0kb upstream 6589 true scaffold_3: 15019303-15025891 Setaria italica
Seita.3G198200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 15023892-15025891 Setaria italica
Seita.3G198200 2.0kb downstream 2.0kb downstream 6589 true scaffold_3: 15017303-15023891 Setaria italica
Seita.3G198200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 15017303-15019302 Setaria italica
Seita.3G198200 5.0kb upstream 5.0kb upstream 9589 true scaffold_3: 15019303-15028891 Setaria italica
Seita.3G198200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 15023892-15028891 Setaria italica
Seita.3G198200 5.0kb downstream 5.0kb downstream 9589 true scaffold_3: 15014303-15023891 Setaria italica
Seita.3G198200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 15014303-15019302 Setaria italica
Seita.3G198200 10.0kb upstream 10.0kb upstream 14589 true scaffold_3: 15019303-15033891 Setaria italica
Seita.3G198200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 15023892-15033891 Setaria italica
Seita.3G198200 10.0kb downstream 10.0kb downstream 14589 true scaffold_3: 15009303-15023891 Setaria italica
Seita.3G198200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 15009303-15019302 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177793 5267 Panicoideae View MSA
124571349 5269 Grass View MSA
122045467 5273 Angiosperm View MSA
121344565 5274 Embryophyte View MSA
123425941 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.899        
cufflinks 10.16       High
cufflinks 4.051       Low
cufflinks 3.952       Low
cufflinks 3.576       Low
cufflinks 10.886       High
cufflinks 4.77        
cufflinks 8.705        
cufflinks 5.222        
cufflinks 9.775        
cufflinks 6.923        
cufflinks 9.279        
cufflinks 7.871        
cufflinks 5.286        
cufflinks 8.856        
cufflinks 3.376       Low
cufflinks 10.259       High
cufflinks 3.355       Low
cufflinks 5.198        
cufflinks 10.829       High

0 Strain