Gene : Seita.3G205200 S. italica v2.2
Genomic Order:  2052 Name:  ? Seita.3G205200
Secondary Identifier:  ? PAC:32713627
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G205200 0.5kb upstream 0.5kb upstream 3570 true scaffold_3: 15780583-15784152 Setaria italica
Seita.3G205200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 15780583-15781082 Setaria italica
Seita.3G205200 0.5kb downstream 0.5kb downstream 3570 true scaffold_3: 15781083-15784652 Setaria italica
Seita.3G205200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 15784153-15784652 Setaria italica
Seita.3G205200 1.0kb upstream 1.0kb upstream 4070 true scaffold_3: 15780083-15784152 Setaria italica
Seita.3G205200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 15780083-15781082 Setaria italica
Seita.3G205200 1.0kb downstream 1.0kb downstream 4070 true scaffold_3: 15781083-15785152 Setaria italica
Seita.3G205200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 15784153-15785152 Setaria italica
Seita.3G205200 2.0kb upstream 2.0kb upstream 5070 true scaffold_3: 15779083-15784152 Setaria italica
Seita.3G205200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 15779083-15781082 Setaria italica
Seita.3G205200 2.0kb downstream 2.0kb downstream 5070 true scaffold_3: 15781083-15786152 Setaria italica
Seita.3G205200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 15784153-15786152 Setaria italica
Seita.3G205200 5.0kb upstream 5.0kb upstream 8070 true scaffold_3: 15776083-15784152 Setaria italica
Seita.3G205200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 15776083-15781082 Setaria italica
Seita.3G205200 5.0kb downstream 5.0kb downstream 8070 true scaffold_3: 15781083-15789152 Setaria italica
Seita.3G205200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 15784153-15789152 Setaria italica
Seita.3G205200 10.0kb upstream 10.0kb upstream 13070 true scaffold_3: 15771083-15784152 Setaria italica
Seita.3G205200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 15771083-15781082 Setaria italica
Seita.3G205200 10.0kb downstream 10.0kb downstream 13070 true scaffold_3: 15781083-15794152 Setaria italica
Seita.3G205200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 15784153-15794152 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185500 5267 Panicoideae View MSA
124576223 5269 Grass View MSA
122046024 5273 Angiosperm View MSA
121347558 5274 Embryophyte View MSA
123380572 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.933     High High
cufflinks 20.642     High High
cufflinks 5.082       Low
cufflinks 4.933       Low
cufflinks 4.851       Low
cufflinks 20.376     High High
cufflinks 10.24        
cufflinks 14.711     High  
cufflinks 11.417        
cufflinks 15.533        
cufflinks 17.241     High  
cufflinks 12.018        
cufflinks 12.471        
cufflinks 6.307       Low
cufflinks 14.299     High  
cufflinks 10.557        
cufflinks 16.5     High  
cufflinks 10.789        
cufflinks 4.544       Low
cufflinks 14.988     High  

0 Strain