Gene : Seita.3G209500 S. italica v2.2
Defline:  (1 of 1) PTHR18968:SF121 - PYRUVATE DECARBOXYLASE 1-RELATED Genomic Order:  2095
Name:  ? Seita.3G209500 Secondary Identifier:  ? PAC:32709812
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5486 Setaria italica pathologic  
Sitalica PWY-6330 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G209500 0.5kb upstream 0.5kb upstream 3059 true scaffold_3: 16444333-16447391 Setaria italica
Seita.3G209500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 16446892-16447391 Setaria italica
Seita.3G209500 0.5kb downstream 0.5kb downstream 3059 true scaffold_3: 16443833-16446891 Setaria italica
Seita.3G209500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 16443833-16444332 Setaria italica
Seita.3G209500 1.0kb upstream 1.0kb upstream 3559 true scaffold_3: 16444333-16447891 Setaria italica
Seita.3G209500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 16446892-16447891 Setaria italica
Seita.3G209500 1.0kb downstream 1.0kb downstream 3559 true scaffold_3: 16443333-16446891 Setaria italica
Seita.3G209500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 16443333-16444332 Setaria italica
Seita.3G209500 2.0kb upstream 2.0kb upstream 4559 true scaffold_3: 16444333-16448891 Setaria italica
Seita.3G209500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 16446892-16448891 Setaria italica
Seita.3G209500 2.0kb downstream 2.0kb downstream 4559 true scaffold_3: 16442333-16446891 Setaria italica
Seita.3G209500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 16442333-16444332 Setaria italica
Seita.3G209500 5.0kb upstream 5.0kb upstream 7559 true scaffold_3: 16444333-16451891 Setaria italica
Seita.3G209500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 16446892-16451891 Setaria italica
Seita.3G209500 5.0kb downstream 5.0kb downstream 7559 true scaffold_3: 16439333-16446891 Setaria italica
Seita.3G209500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 16439333-16444332 Setaria italica
Seita.3G209500 10.0kb upstream 10.0kb upstream 12559 true scaffold_3: 16444333-16456891 Setaria italica
Seita.3G209500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 16446892-16456891 Setaria italica
Seita.3G209500 10.0kb downstream 10.0kb downstream 12559 true scaffold_3: 16434333-16446891 Setaria italica
Seita.3G209500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 16434333-16444332 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191607 5267 Panicoideae View MSA
124575174 5269 Grass View MSA
122042059 5273 Angiosperm View MSA
121351042 5274 Embryophyte View MSA
123426958 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.656       High
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.504        
cufflinks 0.099     Low  
cufflinks 7.655       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.456        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.281        
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  

0 Strain