Gene : Seita.3G209800 S. italica v2.2
Defline:  (1 of 1) PTHR30289 - UNCHARACTERIZED PROTEIN YBCL-RELATED Genomic Order:  2098
Name:  ? Seita.3G209800 Secondary Identifier:  ? PAC:32712767
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G209800 0.5kb upstream 0.5kb upstream 1780 true scaffold_3: 16476749-16478528 Setaria italica
Seita.3G209800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 16476749-16477248 Setaria italica
Seita.3G209800 0.5kb downstream 0.5kb downstream 1780 true scaffold_3: 16477249-16479028 Setaria italica
Seita.3G209800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 16478529-16479028 Setaria italica
Seita.3G209800 1.0kb upstream 1.0kb upstream 2280 true scaffold_3: 16476249-16478528 Setaria italica
Seita.3G209800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 16476249-16477248 Setaria italica
Seita.3G209800 1.0kb downstream 1.0kb downstream 2280 true scaffold_3: 16477249-16479528 Setaria italica
Seita.3G209800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 16478529-16479528 Setaria italica
Seita.3G209800 2.0kb upstream 2.0kb upstream 3280 true scaffold_3: 16475249-16478528 Setaria italica
Seita.3G209800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 16475249-16477248 Setaria italica
Seita.3G209800 2.0kb downstream 2.0kb downstream 3280 true scaffold_3: 16477249-16480528 Setaria italica
Seita.3G209800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 16478529-16480528 Setaria italica
Seita.3G209800 5.0kb upstream 5.0kb upstream 6280 true scaffold_3: 16472249-16478528 Setaria italica
Seita.3G209800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 16472249-16477248 Setaria italica
Seita.3G209800 5.0kb downstream 5.0kb downstream 6280 true scaffold_3: 16477249-16483528 Setaria italica
Seita.3G209800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 16478529-16483528 Setaria italica
Seita.3G209800 10.0kb upstream 10.0kb upstream 11280 true scaffold_3: 16467249-16478528 Setaria italica
Seita.3G209800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 16467249-16477248 Setaria italica
Seita.3G209800 10.0kb downstream 10.0kb downstream 11280 true scaffold_3: 16477249-16488528 Setaria italica
Seita.3G209800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 16478529-16488528 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181599 5267 Panicoideae View MSA
124580267 5269 Grass View MSA
122050615 5273 Angiosperm View MSA
121346096 5274 Embryophyte View MSA
123380328 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.21        
cufflinks 0.367        
cufflinks 0.014     Low Low
cufflinks 0.251        
cufflinks 0.082        
cufflinks 0.252        
cufflinks 0.261        
cufflinks 0.159        
cufflinks 0.156        
cufflinks 0.301     Low  
cufflinks 0.038     Low  
cufflinks 0.233        
cufflinks 7.021       High
cufflinks 2.182        
cufflinks 0.008     Low Low
cufflinks 3.403       High
cufflinks 0.038     Low  
cufflinks 15.146     High High
cufflinks 9.632       High
cufflinks 0.066     Low  

0 Strain