Gene : Seita.3G213700 S. italica v2.2
Defline:  (1 of 1) PTHR11254//PTHR11254:SF345 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  2137
Name:  ? Seita.3G213700 Secondary Identifier:  ? PAC:32712177
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G213700 0.5kb upstream 0.5kb upstream 10420 true scaffold_3: 17291643-17302062 Setaria italica
Seita.3G213700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17291643-17292142 Setaria italica
Seita.3G213700 0.5kb downstream 0.5kb downstream 10420 true scaffold_3: 17292143-17302562 Setaria italica
Seita.3G213700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17302063-17302562 Setaria italica
Seita.3G213700 1.0kb upstream 1.0kb upstream 10920 true scaffold_3: 17291143-17302062 Setaria italica
Seita.3G213700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17291143-17292142 Setaria italica
Seita.3G213700 1.0kb downstream 1.0kb downstream 10920 true scaffold_3: 17292143-17303062 Setaria italica
Seita.3G213700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17302063-17303062 Setaria italica
Seita.3G213700 2.0kb upstream 2.0kb upstream 11920 true scaffold_3: 17290143-17302062 Setaria italica
Seita.3G213700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17290143-17292142 Setaria italica
Seita.3G213700 2.0kb downstream 2.0kb downstream 11920 true scaffold_3: 17292143-17304062 Setaria italica
Seita.3G213700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17302063-17304062 Setaria italica
Seita.3G213700 5.0kb upstream 5.0kb upstream 14920 true scaffold_3: 17287143-17302062 Setaria italica
Seita.3G213700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17287143-17292142 Setaria italica
Seita.3G213700 5.0kb downstream 5.0kb downstream 14920 true scaffold_3: 17292143-17307062 Setaria italica
Seita.3G213700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17302063-17307062 Setaria italica
Seita.3G213700 10.0kb upstream 10.0kb upstream 19920 true scaffold_3: 17282143-17302062 Setaria italica
Seita.3G213700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17282143-17292142 Setaria italica
Seita.3G213700 10.0kb downstream 10.0kb downstream 19920 true scaffold_3: 17292143-17312062 Setaria italica
Seita.3G213700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17302063-17312062 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179694 5267 Panicoideae View MSA
124585478 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.949     High  
cufflinks 11.138        
cufflinks 18.744     High  
cufflinks 16.208     High  
cufflinks 12.044     High  
cufflinks 10.94        
cufflinks 12.01        
cufflinks 7.689       Low
cufflinks 8.43       Low
cufflinks 8.568       Low
cufflinks 15.974     High  
cufflinks 18.971     High  
cufflinks 20.692     High  
cufflinks 13.227        
cufflinks 14.786     High  
cufflinks 19.175     High  
cufflinks 10.7        
cufflinks 46.168     High High
cufflinks 11.59     High  
cufflinks 10.849        

0 Strain