Gene : Seita.3G213200 S. italica v2.2
Defline:  (1 of 1) 3.6.1.5//3.6.1.6 - Apyrase / ATP-diphosphohydrolase // Nucleoside diphosphate phosphatase / Nucleoside-diphosphatase Genomic Order:  2132
Name:  ? Seita.3G213200 Secondary Identifier:  ? PAC:32713889
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7177 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7185 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G213200 0.5kb upstream 0.5kb upstream 7489 true scaffold_3: 17245495-17252983 Setaria italica
Seita.3G213200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17245495-17245994 Setaria italica
Seita.3G213200 0.5kb downstream 0.5kb downstream 7489 true scaffold_3: 17245995-17253483 Setaria italica
Seita.3G213200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17252984-17253483 Setaria italica
Seita.3G213200 1.0kb upstream 1.0kb upstream 7989 true scaffold_3: 17244995-17252983 Setaria italica
Seita.3G213200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17244995-17245994 Setaria italica
Seita.3G213200 1.0kb downstream 1.0kb downstream 7989 true scaffold_3: 17245995-17253983 Setaria italica
Seita.3G213200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17252984-17253983 Setaria italica
Seita.3G213200 2.0kb upstream 2.0kb upstream 8989 true scaffold_3: 17243995-17252983 Setaria italica
Seita.3G213200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17243995-17245994 Setaria italica
Seita.3G213200 2.0kb downstream 2.0kb downstream 8989 true scaffold_3: 17245995-17254983 Setaria italica
Seita.3G213200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17252984-17254983 Setaria italica
Seita.3G213200 5.0kb upstream 5.0kb upstream 11989 true scaffold_3: 17240995-17252983 Setaria italica
Seita.3G213200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17240995-17245994 Setaria italica
Seita.3G213200 5.0kb downstream 5.0kb downstream 11989 true scaffold_3: 17245995-17257983 Setaria italica
Seita.3G213200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17252984-17257983 Setaria italica
Seita.3G213200 10.0kb upstream 10.0kb upstream 16989 true scaffold_3: 17235995-17252983 Setaria italica
Seita.3G213200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17235995-17245994 Setaria italica
Seita.3G213200 10.0kb downstream 10.0kb downstream 16989 true scaffold_3: 17245995-17262983 Setaria italica
Seita.3G213200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17252984-17262983 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177510 5267 Panicoideae View MSA
124577961 5269 Grass View MSA
122042120 5273 Angiosperm View MSA
121349143 5274 Embryophyte View MSA
123426899 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.623        
cufflinks 8.811        
cufflinks 8.506        
cufflinks 7.327        
cufflinks 6.744        
cufflinks 9.41        
cufflinks 7.061        
cufflinks 6.304       Low
cufflinks 5.376       Low
cufflinks 4.567       Low
cufflinks 8.432        
cufflinks 11.237       High
cufflinks 8.874        
cufflinks 6.045       Low
cufflinks 9.998        
cufflinks 8.636        
cufflinks 9.195        
cufflinks 11.432     High High
cufflinks 9.265        
cufflinks 10.307        

0 Strain