Gene : Seita.3G216300 S. italica v2.2
Defline:  (1 of 3) PTHR11035 - PTPLA DOMAIN PROTEIN Genomic Order:  2163
Name:  ? Seita.3G216300 Secondary Identifier:  ? PAC:32711979
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5080 Setaria italica pathologic  
Sitalica PWY-6433 Setaria italica pathologic  
Sitalica PWY-6598 Setaria italica pathologic  
Sitalica PWY-7036 Setaria italica pathologic  
Sitalica PWY-7601 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  
Sitalica PWY-7619 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G216300 0.5kb upstream 0.5kb upstream 3235 true scaffold_3: 17544360-17547594 Setaria italica
Seita.3G216300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 17544360-17544859 Setaria italica
Seita.3G216300 0.5kb downstream 0.5kb downstream 3235 true scaffold_3: 17544860-17548094 Setaria italica
Seita.3G216300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 17547595-17548094 Setaria italica
Seita.3G216300 1.0kb upstream 1.0kb upstream 3735 true scaffold_3: 17543860-17547594 Setaria italica
Seita.3G216300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 17543860-17544859 Setaria italica
Seita.3G216300 1.0kb downstream 1.0kb downstream 3735 true scaffold_3: 17544860-17548594 Setaria italica
Seita.3G216300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 17547595-17548594 Setaria italica
Seita.3G216300 2.0kb upstream 2.0kb upstream 4735 true scaffold_3: 17542860-17547594 Setaria italica
Seita.3G216300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 17542860-17544859 Setaria italica
Seita.3G216300 2.0kb downstream 2.0kb downstream 4735 true scaffold_3: 17544860-17549594 Setaria italica
Seita.3G216300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 17547595-17549594 Setaria italica
Seita.3G216300 5.0kb upstream 5.0kb upstream 7735 true scaffold_3: 17539860-17547594 Setaria italica
Seita.3G216300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 17539860-17544859 Setaria italica
Seita.3G216300 5.0kb downstream 5.0kb downstream 7735 true scaffold_3: 17544860-17552594 Setaria italica
Seita.3G216300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 17547595-17552594 Setaria italica
Seita.3G216300 10.0kb upstream 10.0kb upstream 12735 true scaffold_3: 17534860-17547594 Setaria italica
Seita.3G216300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 17534860-17544859 Setaria italica
Seita.3G216300 10.0kb downstream 10.0kb downstream 12735 true scaffold_3: 17544860-17557594 Setaria italica
Seita.3G216300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 17547595-17557594 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180270 5267 Panicoideae View MSA
124580442 5269 Grass View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.575       Low
cufflinks 6.026        
cufflinks 13.879     High High
cufflinks 17.483     High High
cufflinks 13.288     High High
cufflinks 7.238        
cufflinks 12.228        
cufflinks 11.325        
cufflinks 10.054        
cufflinks 8.851        
cufflinks 4.871       Low
cufflinks 5.239       Low
cufflinks 7.122        
cufflinks 10.316        
cufflinks 5.216       Low
cufflinks 14.678     High High
cufflinks 5.621       Low
cufflinks 6.284        
cufflinks 12.054     High  
cufflinks 6.39        

0 Strain