Gene : Seita.3G299700 S. italica v2.2
Defline:  (1 of 3) PTHR12381 - RIBONUCLEOPROTEIN Genomic Order:  2997
Name:  ? Seita.3G299700 Secondary Identifier:  ? PAC:32711023
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G299700 0.5kb upstream 0.5kb upstream 5573 true scaffold_3: 34190773-34196345 Setaria italica
Seita.3G299700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 34195846-34196345 Setaria italica
Seita.3G299700 0.5kb downstream 0.5kb downstream 5573 true scaffold_3: 34190273-34195845 Setaria italica
Seita.3G299700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 34190273-34190772 Setaria italica
Seita.3G299700 1.0kb upstream 1.0kb upstream 6073 true scaffold_3: 34190773-34196845 Setaria italica
Seita.3G299700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 34195846-34196845 Setaria italica
Seita.3G299700 1.0kb downstream 1.0kb downstream 6073 true scaffold_3: 34189773-34195845 Setaria italica
Seita.3G299700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 34189773-34190772 Setaria italica
Seita.3G299700 2.0kb upstream 2.0kb upstream 7073 true scaffold_3: 34190773-34197845 Setaria italica
Seita.3G299700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 34195846-34197845 Setaria italica
Seita.3G299700 2.0kb downstream 2.0kb downstream 7073 true scaffold_3: 34188773-34195845 Setaria italica
Seita.3G299700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 34188773-34190772 Setaria italica
Seita.3G299700 5.0kb upstream 5.0kb upstream 10073 true scaffold_3: 34190773-34200845 Setaria italica
Seita.3G299700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 34195846-34200845 Setaria italica
Seita.3G299700 5.0kb downstream 5.0kb downstream 10073 true scaffold_3: 34185773-34195845 Setaria italica
Seita.3G299700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 34185773-34190772 Setaria italica
Seita.3G299700 10.0kb upstream 10.0kb upstream 15073 true scaffold_3: 34190773-34205845 Setaria italica
Seita.3G299700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 34195846-34205845 Setaria italica
Seita.3G299700 10.0kb downstream 10.0kb downstream 15073 true scaffold_3: 34180773-34195845 Setaria italica
Seita.3G299700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 34180773-34190772 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117585 5267 Panicoideae View MSA
124588892 5269 Grass View MSA
122045612 5273 Angiosperm View MSA
121347246 5274 Embryophyte View MSA
123425668 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.043        
cufflinks 1.296        
cufflinks 0.656       Low
cufflinks 0.531       Low
cufflinks 0.666       Low
cufflinks 1.509        
cufflinks 1.237        
cufflinks 2.109       High
cufflinks 1.136        
cufflinks 2.04       High
cufflinks 0.817        
cufflinks 1.114        
cufflinks 1.184        
cufflinks 0.883        
cufflinks 1.344        
cufflinks 1.072        
cufflinks 1.591       High
cufflinks 0.669       Low
cufflinks 0.846        
cufflinks 1.445        

0 Strain