Gene : Seita.3G305700 S. italica v2.2
Defline:  (1 of 2) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Genomic Order:  3057
Name:  ? Seita.3G305700 Secondary Identifier:  ? PAC:32711961
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G305700 0.5kb upstream 0.5kb upstream 4513 true scaffold_3: 35419985-35424497 Setaria italica
Seita.3G305700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 35423998-35424497 Setaria italica
Seita.3G305700 0.5kb downstream 0.5kb downstream 4513 true scaffold_3: 35419485-35423997 Setaria italica
Seita.3G305700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 35419485-35419984 Setaria italica
Seita.3G305700 1.0kb upstream 1.0kb upstream 5013 true scaffold_3: 35419985-35424997 Setaria italica
Seita.3G305700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 35423998-35424997 Setaria italica
Seita.3G305700 1.0kb downstream 1.0kb downstream 5013 true scaffold_3: 35418985-35423997 Setaria italica
Seita.3G305700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 35418985-35419984 Setaria italica
Seita.3G305700 2.0kb upstream 2.0kb upstream 6013 true scaffold_3: 35419985-35425997 Setaria italica
Seita.3G305700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 35423998-35425997 Setaria italica
Seita.3G305700 2.0kb downstream 2.0kb downstream 6013 true scaffold_3: 35417985-35423997 Setaria italica
Seita.3G305700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 35417985-35419984 Setaria italica
Seita.3G305700 5.0kb upstream 5.0kb upstream 9013 true scaffold_3: 35419985-35428997 Setaria italica
Seita.3G305700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 35423998-35428997 Setaria italica
Seita.3G305700 5.0kb downstream 5.0kb downstream 9013 true scaffold_3: 35414985-35423997 Setaria italica
Seita.3G305700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 35414985-35419984 Setaria italica
Seita.3G305700 10.0kb upstream 10.0kb upstream 14013 true scaffold_3: 35419985-35433997 Setaria italica
Seita.3G305700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 35423998-35433997 Setaria italica
Seita.3G305700 10.0kb downstream 10.0kb downstream 14013 true scaffold_3: 35409985-35423997 Setaria italica
Seita.3G305700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 35409985-35419984 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196676 5267 Panicoideae View MSA
124581421 5269 Grass View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.793        
cufflinks 3.261        
cufflinks 6.042       High
cufflinks 5.349       High
cufflinks 4.628        
cufflinks 3.311        
cufflinks 3.252        
cufflinks 2.879       Low
cufflinks 3.589        
cufflinks 2.393       Low
cufflinks 3.46        
cufflinks 3.785        
cufflinks 3.514        
cufflinks 3.955        
cufflinks 3.391        
cufflinks 3.449        
cufflinks 3.2        
cufflinks 5.607       High
cufflinks 5.01       High
cufflinks 2.784       Low

0 Strain