Gene : Seita.3G304000 S. italica v2.2
Defline:  (1 of 1) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  3040
Name:  ? Seita.3G304000 Secondary Identifier:  ? PAC:32710254
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G304000 0.5kb upstream 0.5kb upstream 2070 true scaffold_3: 35160378-35162447 Setaria italica
Seita.3G304000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 35161948-35162447 Setaria italica
Seita.3G304000 0.5kb downstream 0.5kb downstream 2070 true scaffold_3: 35159878-35161947 Setaria italica
Seita.3G304000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 35159878-35160377 Setaria italica
Seita.3G304000 1.0kb upstream 1.0kb upstream 2570 true scaffold_3: 35160378-35162947 Setaria italica
Seita.3G304000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 35161948-35162947 Setaria italica
Seita.3G304000 1.0kb downstream 1.0kb downstream 2570 true scaffold_3: 35159378-35161947 Setaria italica
Seita.3G304000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 35159378-35160377 Setaria italica
Seita.3G304000 2.0kb upstream 2.0kb upstream 3570 true scaffold_3: 35160378-35163947 Setaria italica
Seita.3G304000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 35161948-35163947 Setaria italica
Seita.3G304000 2.0kb downstream 2.0kb downstream 3570 true scaffold_3: 35158378-35161947 Setaria italica
Seita.3G304000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 35158378-35160377 Setaria italica
Seita.3G304000 5.0kb upstream 5.0kb upstream 6570 true scaffold_3: 35160378-35166947 Setaria italica
Seita.3G304000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 35161948-35166947 Setaria italica
Seita.3G304000 5.0kb downstream 5.0kb downstream 6570 true scaffold_3: 35155378-35161947 Setaria italica
Seita.3G304000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 35155378-35160377 Setaria italica
Seita.3G304000 10.0kb upstream 10.0kb upstream 11570 true scaffold_3: 35160378-35171947 Setaria italica
Seita.3G304000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 35161948-35171947 Setaria italica
Seita.3G304000 10.0kb downstream 10.0kb downstream 11570 true scaffold_3: 35150378-35161947 Setaria italica
Seita.3G304000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 35150378-35160377 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122194605 5267 Panicoideae View MSA
124570488 5269 Grass View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.338     High  
cufflinks 150.178     High  
cufflinks 805.948     High  
cufflinks 1428.208     High  
cufflinks 1770.393     High High
cufflinks 114.75     High  
cufflinks 731.648     High  
cufflinks 994.874     High  
cufflinks 964.78     High  
cufflinks 44.015     High  
cufflinks 19.466     High  
cufflinks 0.5       Low
cufflinks 4.631        
cufflinks 465.286     High  
cufflinks 0.113     Low Low
cufflinks 610.2     High  
cufflinks 0.199       Low
cufflinks 93.82     High  
cufflinks 730.304     High  
cufflinks 0.021     Low Low

0 Strain