Gene : Seita.3G311400 S. italica v2.2
Defline:  (1 of 1) 2.5.1.72 - Quinolinate synthase / Quinolinate synthetase Genomic Order:  3114
Name:  ? Seita.3G311400 Secondary Identifier:  ? PAC:32714351
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PYRIDNUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G311400 0.5kb upstream 0.5kb upstream 8728 true scaffold_3: 37680472-37689199 Setaria italica
Seita.3G311400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 37688700-37689199 Setaria italica
Seita.3G311400 0.5kb downstream 0.5kb downstream 8728 true scaffold_3: 37679972-37688699 Setaria italica
Seita.3G311400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 37679972-37680471 Setaria italica
Seita.3G311400 1.0kb upstream 1.0kb upstream 9228 true scaffold_3: 37680472-37689699 Setaria italica
Seita.3G311400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 37688700-37689699 Setaria italica
Seita.3G311400 1.0kb downstream 1.0kb downstream 9228 true scaffold_3: 37679472-37688699 Setaria italica
Seita.3G311400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 37679472-37680471 Setaria italica
Seita.3G311400 2.0kb upstream 2.0kb upstream 10228 true scaffold_3: 37680472-37690699 Setaria italica
Seita.3G311400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 37688700-37690699 Setaria italica
Seita.3G311400 2.0kb downstream 2.0kb downstream 10228 true scaffold_3: 37678472-37688699 Setaria italica
Seita.3G311400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 37678472-37680471 Setaria italica
Seita.3G311400 5.0kb upstream 5.0kb upstream 13228 true scaffold_3: 37680472-37693699 Setaria italica
Seita.3G311400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 37688700-37693699 Setaria italica
Seita.3G311400 5.0kb downstream 5.0kb downstream 13228 true scaffold_3: 37675472-37688699 Setaria italica
Seita.3G311400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 37675472-37680471 Setaria italica
Seita.3G311400 10.0kb upstream 10.0kb upstream 18228 true scaffold_3: 37680472-37698699 Setaria italica
Seita.3G311400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 37688700-37698699 Setaria italica
Seita.3G311400 10.0kb downstream 10.0kb downstream 18228 true scaffold_3: 37670472-37688699 Setaria italica
Seita.3G311400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 37670472-37680471 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194133 5267 Panicoideae View MSA
124584011 5269 Grass View MSA
122044938 5273 Angiosperm View MSA
121346502 5274 Embryophyte View MSA
123424432 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.702        
cufflinks 2.216        
cufflinks 5.251       High
cufflinks 4.837       High
cufflinks 4.179        
cufflinks 1.769       Low
cufflinks 6.58       High
cufflinks 3.798        
cufflinks 3.716        
cufflinks 1.552       Low
cufflinks 2.408        
cufflinks 2.81        
cufflinks 1.416       Low
cufflinks 4.942       High
cufflinks 2.463        
cufflinks 3.86        
cufflinks 2.179        
cufflinks 2.457        
cufflinks 4.967       High
cufflinks 1.642       Low

0 Strain