Gene : Seita.3G312200 S. italica v2.2
Defline:  (1 of 7) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  3122
Name:  ? Seita.3G312200 Secondary Identifier:  ? PAC:32711016
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G312200 0.5kb upstream 0.5kb upstream 1715 true scaffold_3: 37960061-37961775 Setaria italica
Seita.3G312200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 37960061-37960560 Setaria italica
Seita.3G312200 0.5kb downstream 0.5kb downstream 1715 true scaffold_3: 37960561-37962275 Setaria italica
Seita.3G312200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 37961776-37962275 Setaria italica
Seita.3G312200 1.0kb upstream 1.0kb upstream 2215 true scaffold_3: 37959561-37961775 Setaria italica
Seita.3G312200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 37959561-37960560 Setaria italica
Seita.3G312200 1.0kb downstream 1.0kb downstream 2215 true scaffold_3: 37960561-37962775 Setaria italica
Seita.3G312200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 37961776-37962775 Setaria italica
Seita.3G312200 2.0kb upstream 2.0kb upstream 3215 true scaffold_3: 37958561-37961775 Setaria italica
Seita.3G312200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 37958561-37960560 Setaria italica
Seita.3G312200 2.0kb downstream 2.0kb downstream 3215 true scaffold_3: 37960561-37963775 Setaria italica
Seita.3G312200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 37961776-37963775 Setaria italica
Seita.3G312200 5.0kb upstream 5.0kb upstream 6215 true scaffold_3: 37955561-37961775 Setaria italica
Seita.3G312200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 37955561-37960560 Setaria italica
Seita.3G312200 5.0kb downstream 5.0kb downstream 6215 true scaffold_3: 37960561-37966775 Setaria italica
Seita.3G312200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 37961776-37966775 Setaria italica
Seita.3G312200 10.0kb upstream 10.0kb upstream 11215 true scaffold_3: 37950561-37961775 Setaria italica
Seita.3G312200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 37950561-37960560 Setaria italica
Seita.3G312200 10.0kb downstream 10.0kb downstream 11215 true scaffold_3: 37960561-37971775 Setaria italica
Seita.3G312200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 37961776-37971775 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064005 5267 Panicoideae View MSA
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.702     High  
cufflinks 49.393     High  
cufflinks 32.649     High  
cufflinks 68.696     High  
cufflinks 140.554     High  
cufflinks 23.923     High  
cufflinks 128.742     High  
cufflinks 73.826     High  
cufflinks 96.926     High  
cufflinks 23.252     High  
cufflinks 16.678     High  
cufflinks 1.656       Low
cufflinks 1.069       Low
cufflinks 35.632     High  
cufflinks 0.453       Low
cufflinks 365.295     High High
cufflinks 0.216       Low
cufflinks 136.067     High  
cufflinks 94.241     High  
cufflinks 0.31       Low

0 Strain