Gene : Seita.3G312400 S. italica v2.2
Defline:  (1 of 7) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  3124
Name:  ? Seita.3G312400 Secondary Identifier:  ? PAC:32711693
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G312400 0.5kb upstream 0.5kb upstream 1191 true scaffold_3: 38100994-38102184 Setaria italica
Seita.3G312400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 38101685-38102184 Setaria italica
Seita.3G312400 0.5kb downstream 0.5kb downstream 1191 true scaffold_3: 38100494-38101684 Setaria italica
Seita.3G312400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 38100494-38100993 Setaria italica
Seita.3G312400 1.0kb upstream 1.0kb upstream 1691 true scaffold_3: 38100994-38102684 Setaria italica
Seita.3G312400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 38101685-38102684 Setaria italica
Seita.3G312400 1.0kb downstream 1.0kb downstream 1691 true scaffold_3: 38099994-38101684 Setaria italica
Seita.3G312400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 38099994-38100993 Setaria italica
Seita.3G312400 2.0kb upstream 2.0kb upstream 2691 true scaffold_3: 38100994-38103684 Setaria italica
Seita.3G312400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 38101685-38103684 Setaria italica
Seita.3G312400 2.0kb downstream 2.0kb downstream 2691 true scaffold_3: 38098994-38101684 Setaria italica
Seita.3G312400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 38098994-38100993 Setaria italica
Seita.3G312400 5.0kb upstream 5.0kb upstream 5691 true scaffold_3: 38100994-38106684 Setaria italica
Seita.3G312400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 38101685-38106684 Setaria italica
Seita.3G312400 5.0kb downstream 5.0kb downstream 5691 true scaffold_3: 38095994-38101684 Setaria italica
Seita.3G312400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 38095994-38100993 Setaria italica
Seita.3G312400 10.0kb upstream 10.0kb upstream 10691 true scaffold_3: 38100994-38111684 Setaria italica
Seita.3G312400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 38101685-38111684 Setaria italica
Seita.3G312400 10.0kb downstream 10.0kb downstream 10691 true scaffold_3: 38090994-38101684 Setaria italica
Seita.3G312400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 38090994-38100993 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199516 5267 Panicoideae View MSA
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.166       Low
cufflinks 0.493        
cufflinks 1.125        
cufflinks 1.448        
cufflinks 5.279       High
cufflinks 0.499        
cufflinks 2.718        
cufflinks 5.176       High
cufflinks 4.961       High
cufflinks 0.242     Low  
cufflinks 0.079     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.498        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.021        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.13       Low
cufflinks 1.613        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain