Gene : Seita.3G315200 S. italica v2.2
Defline:  (1 of 1) PTHR14021:SF15 - IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB, MITOCHONDRIAL Genomic Order:  3152
Name:  ? Seita.3G315200 Secondary Identifier:  ? PAC:32713098
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G315200 0.5kb upstream 0.5kb upstream 3372 true scaffold_3: 38753523-38756894 Setaria italica
Seita.3G315200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 38756395-38756894 Setaria italica
Seita.3G315200 0.5kb downstream 0.5kb downstream 3372 true scaffold_3: 38753023-38756394 Setaria italica
Seita.3G315200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 38753023-38753522 Setaria italica
Seita.3G315200 1.0kb upstream 1.0kb upstream 3872 true scaffold_3: 38753523-38757394 Setaria italica
Seita.3G315200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 38756395-38757394 Setaria italica
Seita.3G315200 1.0kb downstream 1.0kb downstream 3872 true scaffold_3: 38752523-38756394 Setaria italica
Seita.3G315200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 38752523-38753522 Setaria italica
Seita.3G315200 2.0kb upstream 2.0kb upstream 4872 true scaffold_3: 38753523-38758394 Setaria italica
Seita.3G315200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 38756395-38758394 Setaria italica
Seita.3G315200 2.0kb downstream 2.0kb downstream 4872 true scaffold_3: 38751523-38756394 Setaria italica
Seita.3G315200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 38751523-38753522 Setaria italica
Seita.3G315200 5.0kb upstream 5.0kb upstream 7872 true scaffold_3: 38753523-38761394 Setaria italica
Seita.3G315200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 38756395-38761394 Setaria italica
Seita.3G315200 5.0kb downstream 5.0kb downstream 7872 true scaffold_3: 38748523-38756394 Setaria italica
Seita.3G315200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 38748523-38753522 Setaria italica
Seita.3G315200 10.0kb upstream 10.0kb upstream 12872 true scaffold_3: 38753523-38766394 Setaria italica
Seita.3G315200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 38756395-38766394 Setaria italica
Seita.3G315200 10.0kb downstream 10.0kb downstream 12872 true scaffold_3: 38743523-38756394 Setaria italica
Seita.3G315200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 38743523-38753522 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179544 5267 Panicoideae View MSA
124569010 5269 Grass View MSA
122043255 5273 Angiosperm View MSA
121346465 5274 Embryophyte View MSA
123425339 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.236        
cufflinks 3.124       High
cufflinks 1.847        
cufflinks 1.752        
cufflinks 1.4       Low
cufflinks 3.024        
cufflinks 1.791        
cufflinks 2.406        
cufflinks 1.574       Low
cufflinks 4.268       High
cufflinks 2.194        
cufflinks 3.086       High
cufflinks 1.825        
cufflinks 2.119        
cufflinks 3.01        
cufflinks 1.998        
cufflinks 3.303       High
cufflinks 1.233       Low
cufflinks 2.215        
cufflinks 2.513        

0 Strain