Gene : Seita.3G316100 S. italica v2.2
Defline:  (1 of 7) 1.1.1.146 - 11-beta-hydroxysteroid dehydrogenase / Corticosteroid 11-beta-dehydrogenase Genomic Order:  3161
Name:  ? Seita.3G316100 Secondary Identifier:  ? PAC:32714173
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G316100 0.5kb upstream 0.5kb upstream 4457 true scaffold_3: 39064657-39069113 Setaria italica
Seita.3G316100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 39064657-39065156 Setaria italica
Seita.3G316100 0.5kb downstream 0.5kb downstream 4457 true scaffold_3: 39065157-39069613 Setaria italica
Seita.3G316100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 39069114-39069613 Setaria italica
Seita.3G316100 1.0kb upstream 1.0kb upstream 4957 true scaffold_3: 39064157-39069113 Setaria italica
Seita.3G316100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 39064157-39065156 Setaria italica
Seita.3G316100 1.0kb downstream 1.0kb downstream 4957 true scaffold_3: 39065157-39070113 Setaria italica
Seita.3G316100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 39069114-39070113 Setaria italica
Seita.3G316100 2.0kb upstream 2.0kb upstream 5957 true scaffold_3: 39063157-39069113 Setaria italica
Seita.3G316100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 39063157-39065156 Setaria italica
Seita.3G316100 2.0kb downstream 2.0kb downstream 5957 true scaffold_3: 39065157-39071113 Setaria italica
Seita.3G316100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 39069114-39071113 Setaria italica
Seita.3G316100 5.0kb upstream 5.0kb upstream 8957 true scaffold_3: 39060157-39069113 Setaria italica
Seita.3G316100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 39060157-39065156 Setaria italica
Seita.3G316100 5.0kb downstream 5.0kb downstream 8957 true scaffold_3: 39065157-39074113 Setaria italica
Seita.3G316100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 39069114-39074113 Setaria italica
Seita.3G316100 10.0kb upstream 10.0kb upstream 13957 true scaffold_3: 39055157-39069113 Setaria italica
Seita.3G316100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 39055157-39065156 Setaria italica
Seita.3G316100 10.0kb downstream 10.0kb downstream 13957 true scaffold_3: 39065157-39079113 Setaria italica
Seita.3G316100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 39069114-39079113 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186578 5267 Panicoideae View MSA
124569046 5269 Grass View MSA
122047684 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121345666 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.165        
cufflinks 0.003     Low Low
cufflinks 0.1        
cufflinks 0.222        
cufflinks 0.46        
cufflinks 0.028     Low  
cufflinks 0.014     Low Low
cufflinks 0.08     Low  
cufflinks 0.085     Low  
cufflinks 0.18     Low  
cufflinks 0.063     Low  
cufflinks 0.059     Low  
cufflinks 0.925       High
cufflinks 0.271        
cufflinks 0.013     Low Low
cufflinks 0.601        
cufflinks 0.012     Low Low
cufflinks 6.417       High
cufflinks 0.35        
cufflinks 0.008     Low Low

0 Strain