Gene : Seita.3G321400 S. italica v2.2
Defline:  (1 of 4) PF12576 - Protein of unknown function (DUF3754) (DUF3754) Genomic Order:  3214
Name:  ? Seita.3G321400 Secondary Identifier:  ? PAC:32714552
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G321400 0.5kb upstream 0.5kb upstream 9022 true scaffold_3: 40120324-40129345 Setaria italica
Seita.3G321400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 40128846-40129345 Setaria italica
Seita.3G321400 0.5kb downstream 0.5kb downstream 9022 true scaffold_3: 40119824-40128845 Setaria italica
Seita.3G321400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 40119824-40120323 Setaria italica
Seita.3G321400 1.0kb upstream 1.0kb upstream 9522 true scaffold_3: 40120324-40129845 Setaria italica
Seita.3G321400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 40128846-40129845 Setaria italica
Seita.3G321400 1.0kb downstream 1.0kb downstream 9522 true scaffold_3: 40119324-40128845 Setaria italica
Seita.3G321400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 40119324-40120323 Setaria italica
Seita.3G321400 2.0kb upstream 2.0kb upstream 10522 true scaffold_3: 40120324-40130845 Setaria italica
Seita.3G321400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 40128846-40130845 Setaria italica
Seita.3G321400 2.0kb downstream 2.0kb downstream 10522 true scaffold_3: 40118324-40128845 Setaria italica
Seita.3G321400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 40118324-40120323 Setaria italica
Seita.3G321400 5.0kb upstream 5.0kb upstream 13522 true scaffold_3: 40120324-40133845 Setaria italica
Seita.3G321400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 40128846-40133845 Setaria italica
Seita.3G321400 5.0kb downstream 5.0kb downstream 13522 true scaffold_3: 40115324-40128845 Setaria italica
Seita.3G321400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 40115324-40120323 Setaria italica
Seita.3G321400 10.0kb upstream 10.0kb upstream 18522 true scaffold_3: 40120324-40138845 Setaria italica
Seita.3G321400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 40128846-40138845 Setaria italica
Seita.3G321400 10.0kb downstream 10.0kb downstream 18522 true scaffold_3: 40110324-40128845 Setaria italica
Seita.3G321400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 40110324-40120323 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194867 5267 Panicoideae View MSA
124569446 5269 Grass View MSA
122045487 5273 Angiosperm View MSA
121345129 5274 Embryophyte View MSA
123428488 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.008        
cufflinks 5.599       Low
cufflinks 6.464        
cufflinks 5.841        
cufflinks 6.305        
cufflinks 5.893        
cufflinks 8.582        
cufflinks 7.286        
cufflinks 7.726        
cufflinks 3.839       Low
cufflinks 7.2        
cufflinks 8.806        
cufflinks 10.026       High
cufflinks 5.826        
cufflinks 7.587        
cufflinks 9.202       High
cufflinks 8.462        
cufflinks 9.545       High
cufflinks 5.94        
cufflinks 8.001        

0 Strain