Gene : Seita.3G322800 S. italica v2.2
Defline:  (1 of 1) 1.1.1.316 - L-galactose 1-dehydrogenase / L-galDH Genomic Order:  3228
Name:  ? Seita.3G322800 Secondary Identifier:  ? PAC:32711672
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-882 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G322800 0.5kb upstream 0.5kb upstream 5654 true scaffold_3: 40421561-40427214 Setaria italica
Seita.3G322800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 40426715-40427214 Setaria italica
Seita.3G322800 0.5kb downstream 0.5kb downstream 5654 true scaffold_3: 40421061-40426714 Setaria italica
Seita.3G322800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 40421061-40421560 Setaria italica
Seita.3G322800 1.0kb upstream 1.0kb upstream 6154 true scaffold_3: 40421561-40427714 Setaria italica
Seita.3G322800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 40426715-40427714 Setaria italica
Seita.3G322800 1.0kb downstream 1.0kb downstream 6154 true scaffold_3: 40420561-40426714 Setaria italica
Seita.3G322800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 40420561-40421560 Setaria italica
Seita.3G322800 2.0kb upstream 2.0kb upstream 7154 true scaffold_3: 40421561-40428714 Setaria italica
Seita.3G322800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 40426715-40428714 Setaria italica
Seita.3G322800 2.0kb downstream 2.0kb downstream 7154 true scaffold_3: 40419561-40426714 Setaria italica
Seita.3G322800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 40419561-40421560 Setaria italica
Seita.3G322800 5.0kb upstream 5.0kb upstream 10154 true scaffold_3: 40421561-40431714 Setaria italica
Seita.3G322800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 40426715-40431714 Setaria italica
Seita.3G322800 5.0kb downstream 5.0kb downstream 10154 true scaffold_3: 40416561-40426714 Setaria italica
Seita.3G322800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 40416561-40421560 Setaria italica
Seita.3G322800 10.0kb upstream 10.0kb upstream 15154 true scaffold_3: 40421561-40436714 Setaria italica
Seita.3G322800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 40426715-40436714 Setaria italica
Seita.3G322800 10.0kb downstream 10.0kb downstream 15154 true scaffold_3: 40411561-40426714 Setaria italica
Seita.3G322800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 40411561-40421560 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188409 5267 Panicoideae View MSA
124569224 5269 Grass View MSA
122044001 5273 Angiosperm View MSA
121345751 5274 Embryophyte View MSA
123427214 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.379        
cufflinks 5.299        
cufflinks 5.262        
cufflinks 6.884        
cufflinks 5.542        
cufflinks 5.349        
cufflinks 4.39        
cufflinks 8.931       High
cufflinks 8.128        
cufflinks 10.555       High
cufflinks 7.764        
cufflinks 6.776        
cufflinks 9.019       High
cufflinks 4.596        
cufflinks 6.156        
cufflinks 2.835       Low
cufflinks 9.81       High
cufflinks 3.151       Low
cufflinks 4.201       Low
cufflinks 8.334        

0 Strain