Gene : Seita.3G326800 S. italica v2.2
Defline:  (1 of 7) PF01439 - Metallothionein (Metallothio_2) Genomic Order:  3268
Name:  ? Seita.3G326800 Secondary Identifier:  ? PAC:32714760
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G326800 0.5kb upstream 0.5kb upstream 1380 true scaffold_3: 41120239-41121618 Setaria italica
Seita.3G326800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 41121119-41121618 Setaria italica
Seita.3G326800 0.5kb downstream 0.5kb downstream 1380 true scaffold_3: 41119739-41121118 Setaria italica
Seita.3G326800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 41119739-41120238 Setaria italica
Seita.3G326800 1.0kb upstream 1.0kb upstream 1880 true scaffold_3: 41120239-41122118 Setaria italica
Seita.3G326800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 41121119-41122118 Setaria italica
Seita.3G326800 1.0kb downstream 1.0kb downstream 1880 true scaffold_3: 41119239-41121118 Setaria italica
Seita.3G326800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 41119239-41120238 Setaria italica
Seita.3G326800 2.0kb upstream 2.0kb upstream 2880 true scaffold_3: 41120239-41123118 Setaria italica
Seita.3G326800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 41121119-41123118 Setaria italica
Seita.3G326800 2.0kb downstream 2.0kb downstream 2880 true scaffold_3: 41118239-41121118 Setaria italica
Seita.3G326800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 41118239-41120238 Setaria italica
Seita.3G326800 5.0kb upstream 5.0kb upstream 5880 true scaffold_3: 41120239-41126118 Setaria italica
Seita.3G326800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 41121119-41126118 Setaria italica
Seita.3G326800 5.0kb downstream 5.0kb downstream 5880 true scaffold_3: 41115239-41121118 Setaria italica
Seita.3G326800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 41115239-41120238 Setaria italica
Seita.3G326800 10.0kb upstream 10.0kb upstream 10880 true scaffold_3: 41120239-41131118 Setaria italica
Seita.3G326800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 41121119-41131118 Setaria italica
Seita.3G326800 10.0kb downstream 10.0kb downstream 10880 true scaffold_3: 41110239-41121118 Setaria italica
Seita.3G326800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 41110239-41120238 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194041 5267 Panicoideae View MSA
124590261 5269 Grass View MSA
122044110 5273 Angiosperm View MSA
121310239 5274 Embryophyte View MSA
123347784 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.419        
cufflinks 2.349       Low
cufflinks 5.981        
cufflinks 11.381     High  
cufflinks 11.973     High  
cufflinks 2.155       Low
cufflinks 7.017        
cufflinks 12.493        
cufflinks 9.452        
cufflinks 175.362     High  
cufflinks 53.172     High  
cufflinks 308.913     High High
cufflinks 217.441     High High
cufflinks 9.862        
cufflinks 124.172     High  
cufflinks 1.63       Low
cufflinks 848.217     High High
cufflinks 199.915     High  
cufflinks 240.18     High High
cufflinks 271.728     High High

0 Strain