Gene : Seita.3G325900 S. italica v2.2
Defline:  (1 of 1) PTHR10641:SF457 - TRANSCRIPTION FACTOR AS1 Genomic Order:  3259
Name:  ? Seita.3G325900 Secondary Identifier:  ? PAC:32711227
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G325900 0.5kb upstream 0.5kb upstream 1602 true scaffold_3: 41069672-41071273 Setaria italica
Seita.3G325900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 41070774-41071273 Setaria italica
Seita.3G325900 0.5kb downstream 0.5kb downstream 1602 true scaffold_3: 41069172-41070773 Setaria italica
Seita.3G325900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 41069172-41069671 Setaria italica
Seita.3G325900 1.0kb upstream 1.0kb upstream 2102 true scaffold_3: 41069672-41071773 Setaria italica
Seita.3G325900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 41070774-41071773 Setaria italica
Seita.3G325900 1.0kb downstream 1.0kb downstream 2102 true scaffold_3: 41068672-41070773 Setaria italica
Seita.3G325900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 41068672-41069671 Setaria italica
Seita.3G325900 2.0kb upstream 2.0kb upstream 3102 true scaffold_3: 41069672-41072773 Setaria italica
Seita.3G325900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 41070774-41072773 Setaria italica
Seita.3G325900 2.0kb downstream 2.0kb downstream 3102 true scaffold_3: 41067672-41070773 Setaria italica
Seita.3G325900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 41067672-41069671 Setaria italica
Seita.3G325900 5.0kb upstream 5.0kb upstream 6102 true scaffold_3: 41069672-41075773 Setaria italica
Seita.3G325900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 41070774-41075773 Setaria italica
Seita.3G325900 5.0kb downstream 5.0kb downstream 6102 true scaffold_3: 41064672-41070773 Setaria italica
Seita.3G325900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 41064672-41069671 Setaria italica
Seita.3G325900 10.0kb upstream 10.0kb upstream 11102 true scaffold_3: 41069672-41080773 Setaria italica
Seita.3G325900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 41070774-41080773 Setaria italica
Seita.3G325900 10.0kb downstream 10.0kb downstream 11102 true scaffold_3: 41059672-41070773 Setaria italica
Seita.3G325900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 41059672-41069671 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176363 5267 Panicoideae View MSA
124585083 5269 Grass View MSA
122045280 5273 Angiosperm View MSA
121310428 5274 Embryophyte View MSA
123347915 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.476        
cufflinks 32.151     High High
cufflinks 0.049     Low Low
cufflinks 0.068     Low  
cufflinks 0.995        
cufflinks 33.611     High High
cufflinks 9.94        
cufflinks 12.087        
cufflinks 11.299        
cufflinks 16.3     High High
cufflinks 5.212        
cufflinks 0.046     Low Low
cufflinks 0.18        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low Low
cufflinks 2.205        
cufflinks 0.015     Low Low
cufflinks 0.879        
cufflinks 0.197        
cufflinks 0.079     Low  

0 Strain