Gene : Seita.3G331200 S. italica v2.2
Defline:  (1 of 1) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Genomic Order:  3312
Name:  ? Seita.3G331200 Secondary Identifier:  ? PAC:32713128
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G331200 0.5kb upstream 0.5kb upstream 7519 true scaffold_3: 42363021-42370539 Setaria italica
Seita.3G331200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42370040-42370539 Setaria italica
Seita.3G331200 0.5kb downstream 0.5kb downstream 7519 true scaffold_3: 42362521-42370039 Setaria italica
Seita.3G331200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42362521-42363020 Setaria italica
Seita.3G331200 1.0kb upstream 1.0kb upstream 8019 true scaffold_3: 42363021-42371039 Setaria italica
Seita.3G331200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42370040-42371039 Setaria italica
Seita.3G331200 1.0kb downstream 1.0kb downstream 8019 true scaffold_3: 42362021-42370039 Setaria italica
Seita.3G331200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42362021-42363020 Setaria italica
Seita.3G331200 2.0kb upstream 2.0kb upstream 9019 true scaffold_3: 42363021-42372039 Setaria italica
Seita.3G331200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42370040-42372039 Setaria italica
Seita.3G331200 2.0kb downstream 2.0kb downstream 9019 true scaffold_3: 42361021-42370039 Setaria italica
Seita.3G331200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42361021-42363020 Setaria italica
Seita.3G331200 5.0kb upstream 5.0kb upstream 12019 true scaffold_3: 42363021-42375039 Setaria italica
Seita.3G331200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42370040-42375039 Setaria italica
Seita.3G331200 5.0kb downstream 5.0kb downstream 12019 true scaffold_3: 42358021-42370039 Setaria italica
Seita.3G331200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42358021-42363020 Setaria italica
Seita.3G331200 10.0kb upstream 10.0kb upstream 17019 true scaffold_3: 42363021-42380039 Setaria italica
Seita.3G331200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42370040-42380039 Setaria italica
Seita.3G331200 10.0kb downstream 10.0kb downstream 17019 true scaffold_3: 42353021-42370039 Setaria italica
Seita.3G331200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42353021-42363020 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179121 5267 Panicoideae View MSA
124587205 5269 Grass View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.706        
cufflinks 2.231        
cufflinks 2.339        
cufflinks 2.151        
cufflinks 3.019        
cufflinks 2.589        
cufflinks 3.727        
cufflinks 5.814       High
cufflinks 5.194       High
cufflinks 3.43        
cufflinks 2.596        
cufflinks 2.49        
cufflinks 2.282        
cufflinks 2.437        
cufflinks 2.742        
cufflinks 2.363        
cufflinks 3.947       High
cufflinks 1.29       Low
cufflinks 2.215        
cufflinks 3.519        

0 Strain