Gene : Seita.3G332500 S. italica v2.2
Defline:  (1 of 1) PF10650 - Putative zinc-finger domain (zf-C3H1) Genomic Order:  3325
Name:  ? Seita.3G332500 Secondary Identifier:  ? PAC:32714387
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G332500 0.5kb upstream 0.5kb upstream 8973 true scaffold_3: 42563778-42572750 Setaria italica
Seita.3G332500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42572251-42572750 Setaria italica
Seita.3G332500 0.5kb downstream 0.5kb downstream 8973 true scaffold_3: 42563278-42572250 Setaria italica
Seita.3G332500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42563278-42563777 Setaria italica
Seita.3G332500 1.0kb upstream 1.0kb upstream 9473 true scaffold_3: 42563778-42573250 Setaria italica
Seita.3G332500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42572251-42573250 Setaria italica
Seita.3G332500 1.0kb downstream 1.0kb downstream 9473 true scaffold_3: 42562778-42572250 Setaria italica
Seita.3G332500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42562778-42563777 Setaria italica
Seita.3G332500 2.0kb upstream 2.0kb upstream 10473 true scaffold_3: 42563778-42574250 Setaria italica
Seita.3G332500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42572251-42574250 Setaria italica
Seita.3G332500 2.0kb downstream 2.0kb downstream 10473 true scaffold_3: 42561778-42572250 Setaria italica
Seita.3G332500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42561778-42563777 Setaria italica
Seita.3G332500 5.0kb upstream 5.0kb upstream 13473 true scaffold_3: 42563778-42577250 Setaria italica
Seita.3G332500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42572251-42577250 Setaria italica
Seita.3G332500 5.0kb downstream 5.0kb downstream 13473 true scaffold_3: 42558778-42572250 Setaria italica
Seita.3G332500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42558778-42563777 Setaria italica
Seita.3G332500 10.0kb upstream 10.0kb upstream 18473 true scaffold_3: 42563778-42582250 Setaria italica
Seita.3G332500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42572251-42582250 Setaria italica
Seita.3G332500 10.0kb downstream 10.0kb downstream 18473 true scaffold_3: 42553778-42572250 Setaria italica
Seita.3G332500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42553778-42563777 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187132 5267 Panicoideae View MSA
124570038 5269 Grass View MSA
122048240 5273 Angiosperm View MSA
121310901 5274 Embryophyte View MSA
123348277 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.495        
cufflinks 5.574        
cufflinks 7.071       High
cufflinks 5.343        
cufflinks 4.079        
cufflinks 5.524        
cufflinks 3.613        
cufflinks 4.061        
cufflinks 3.303       Low
cufflinks 2.112       Low
cufflinks 4.272        
cufflinks 4.895        
cufflinks 3.795        
cufflinks 5.406        
cufflinks 5.262        
cufflinks 6.115        
cufflinks 3.858        
cufflinks 8.951       High
cufflinks 3.77        
cufflinks 4.383        

0 Strain