Gene : Seita.3G332700 S. italica v2.2
Defline:  (1 of 3) 2.3.3.8 - ATP citrate synthase / Citric cleavage enzyme Genomic Order:  3327
Name:  ? Seita.3G332700 Secondary Identifier:  ? PAC:32712777
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5172 Setaria italica pathologic  
Sitalica PWY-5173 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G332700 0.5kb upstream 0.5kb upstream 4969 true scaffold_3: 42577369-42582337 Setaria italica
Seita.3G332700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42581838-42582337 Setaria italica
Seita.3G332700 0.5kb downstream 0.5kb downstream 4969 true scaffold_3: 42576869-42581837 Setaria italica
Seita.3G332700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42576869-42577368 Setaria italica
Seita.3G332700 1.0kb upstream 1.0kb upstream 5469 true scaffold_3: 42577369-42582837 Setaria italica
Seita.3G332700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42581838-42582837 Setaria italica
Seita.3G332700 1.0kb downstream 1.0kb downstream 5469 true scaffold_3: 42576369-42581837 Setaria italica
Seita.3G332700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42576369-42577368 Setaria italica
Seita.3G332700 2.0kb upstream 2.0kb upstream 6469 true scaffold_3: 42577369-42583837 Setaria italica
Seita.3G332700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42581838-42583837 Setaria italica
Seita.3G332700 2.0kb downstream 2.0kb downstream 6469 true scaffold_3: 42575369-42581837 Setaria italica
Seita.3G332700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42575369-42577368 Setaria italica
Seita.3G332700 5.0kb upstream 5.0kb upstream 9469 true scaffold_3: 42577369-42586837 Setaria italica
Seita.3G332700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42581838-42586837 Setaria italica
Seita.3G332700 5.0kb downstream 5.0kb downstream 9469 true scaffold_3: 42572369-42581837 Setaria italica
Seita.3G332700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42572369-42577368 Setaria italica
Seita.3G332700 10.0kb upstream 10.0kb upstream 14469 true scaffold_3: 42577369-42591837 Setaria italica
Seita.3G332700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42581838-42591837 Setaria italica
Seita.3G332700 10.0kb downstream 10.0kb downstream 14469 true scaffold_3: 42567369-42581837 Setaria italica
Seita.3G332700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42567369-42577368 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175972 5267 Panicoideae View MSA
124579973 5269 Grass View MSA
122042565 5273 Angiosperm View MSA
121348583 5274 Embryophyte View MSA
123428169 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.991     High  
cufflinks 29.291     High  
cufflinks 5.808       Low
cufflinks 4.858       Low
cufflinks 6.201       Low
cufflinks 25.235     High  
cufflinks 19.452     High  
cufflinks 18.046     High  
cufflinks 18.296     High  
cufflinks 19.798     High  
cufflinks 28.913     High  
cufflinks 23.831     High  
cufflinks 38.05     High High
cufflinks 7.248       Low
cufflinks 29.302     High  
cufflinks 7.747        
cufflinks 25.669     High  
cufflinks 4.111       Low
cufflinks 8.648        
cufflinks 30.712     High  

0 Strain