Gene : Seita.3G335600 S. italica v2.2
Genomic Order:  3356 Name:  ? Seita.3G335600
Secondary Identifier:  ? PAC:32711815
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G335600 0.5kb upstream 0.5kb upstream 2985 true scaffold_3: 42875949-42878933 Setaria italica
Seita.3G335600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42878434-42878933 Setaria italica
Seita.3G335600 0.5kb downstream 0.5kb downstream 2985 true scaffold_3: 42875449-42878433 Setaria italica
Seita.3G335600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42875449-42875948 Setaria italica
Seita.3G335600 1.0kb upstream 1.0kb upstream 3485 true scaffold_3: 42875949-42879433 Setaria italica
Seita.3G335600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42878434-42879433 Setaria italica
Seita.3G335600 1.0kb downstream 1.0kb downstream 3485 true scaffold_3: 42874949-42878433 Setaria italica
Seita.3G335600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42874949-42875948 Setaria italica
Seita.3G335600 2.0kb upstream 2.0kb upstream 4485 true scaffold_3: 42875949-42880433 Setaria italica
Seita.3G335600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42878434-42880433 Setaria italica
Seita.3G335600 2.0kb downstream 2.0kb downstream 4485 true scaffold_3: 42873949-42878433 Setaria italica
Seita.3G335600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42873949-42875948 Setaria italica
Seita.3G335600 5.0kb upstream 5.0kb upstream 7485 true scaffold_3: 42875949-42883433 Setaria italica
Seita.3G335600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42878434-42883433 Setaria italica
Seita.3G335600 5.0kb downstream 5.0kb downstream 7485 true scaffold_3: 42870949-42878433 Setaria italica
Seita.3G335600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42870949-42875948 Setaria italica
Seita.3G335600 10.0kb upstream 10.0kb upstream 12485 true scaffold_3: 42875949-42888433 Setaria italica
Seita.3G335600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42878434-42888433 Setaria italica
Seita.3G335600 10.0kb downstream 10.0kb downstream 12485 true scaffold_3: 42865949-42878433 Setaria italica
Seita.3G335600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42865949-42875948 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175633 5267 Panicoideae View MSA
124585729 5269 Grass View MSA
122046334 5273 Angiosperm View MSA
121346218 5274 Embryophyte View MSA
123427523 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.646        
cufflinks 9.805        
cufflinks 5.787       Low
cufflinks 5.925        
cufflinks 4.858       Low
cufflinks 8.822        
cufflinks 7.54        
cufflinks 6.222        
cufflinks 4.674       Low
cufflinks 8.956        
cufflinks 8.094        
cufflinks 12.48       High
cufflinks 9.54        
cufflinks 6.758        
cufflinks 10.585        
cufflinks 10.197        
cufflinks 11.243        
cufflinks 17.77     High High
cufflinks 5.821       Low
cufflinks 9.401        

0 Strain