Gene : Seita.3G334200 S. italica v2.2
Defline:  (1 of 1) PTHR22778:SF0 - OVARIAN CANCER-ASSOCIATED GENE 2 PROTEIN Genomic Order:  3342
Name:  ? Seita.3G334200 Secondary Identifier:  ? PAC:32712360
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G334200 0.5kb upstream 0.5kb upstream 3706 true scaffold_3: 42764622-42768327 Setaria italica
Seita.3G334200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42767828-42768327 Setaria italica
Seita.3G334200 0.5kb downstream 0.5kb downstream 3706 true scaffold_3: 42764122-42767827 Setaria italica
Seita.3G334200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42764122-42764621 Setaria italica
Seita.3G334200 1.0kb upstream 1.0kb upstream 4206 true scaffold_3: 42764622-42768827 Setaria italica
Seita.3G334200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42767828-42768827 Setaria italica
Seita.3G334200 1.0kb downstream 1.0kb downstream 4206 true scaffold_3: 42763622-42767827 Setaria italica
Seita.3G334200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42763622-42764621 Setaria italica
Seita.3G334200 2.0kb upstream 2.0kb upstream 5206 true scaffold_3: 42764622-42769827 Setaria italica
Seita.3G334200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42767828-42769827 Setaria italica
Seita.3G334200 2.0kb downstream 2.0kb downstream 5206 true scaffold_3: 42762622-42767827 Setaria italica
Seita.3G334200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42762622-42764621 Setaria italica
Seita.3G334200 5.0kb upstream 5.0kb upstream 8206 true scaffold_3: 42764622-42772827 Setaria italica
Seita.3G334200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42767828-42772827 Setaria italica
Seita.3G334200 5.0kb downstream 5.0kb downstream 8206 true scaffold_3: 42759622-42767827 Setaria italica
Seita.3G334200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42759622-42764621 Setaria italica
Seita.3G334200 10.0kb upstream 10.0kb upstream 13206 true scaffold_3: 42764622-42777827 Setaria italica
Seita.3G334200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42767828-42777827 Setaria italica
Seita.3G334200 10.0kb downstream 10.0kb downstream 13206 true scaffold_3: 42754622-42767827 Setaria italica
Seita.3G334200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42754622-42764621 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182391 5267 Panicoideae View MSA
124575788 5269 Grass View MSA
122041526 5273 Angiosperm View MSA
121343974 5274 Embryophyte View MSA
123427771 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.411       High
cufflinks 5.758       High
cufflinks 3.196        
cufflinks 2.976       Low
cufflinks 2.455       Low
cufflinks 4.669        
cufflinks 4.295        
cufflinks 3.356        
cufflinks 3.378        
cufflinks 4.43        
cufflinks 4.514        
cufflinks 4.72        
cufflinks 3.338        
cufflinks 3.0       Low
cufflinks 4.251        
cufflinks 5.062        
cufflinks 4.879        
cufflinks 6.779       High
cufflinks 2.63       Low
cufflinks 4.347        

0 Strain