Gene : Seita.3G334300 S. italica v2.2
Defline:  (1 of 1) PTHR21011//PTHR21011:SF4 - MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 Genomic Order:  3343
Name:  ? Seita.3G334300 Secondary Identifier:  ? PAC:32710957
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G334300 0.5kb upstream 0.5kb upstream 3500 true scaffold_3: 42767491-42770990 Setaria italica
Seita.3G334300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42767491-42767990 Setaria italica
Seita.3G334300 0.5kb downstream 0.5kb downstream 3500 true scaffold_3: 42767991-42771490 Setaria italica
Seita.3G334300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42770991-42771490 Setaria italica
Seita.3G334300 1.0kb upstream 1.0kb upstream 4000 true scaffold_3: 42766991-42770990 Setaria italica
Seita.3G334300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42766991-42767990 Setaria italica
Seita.3G334300 1.0kb downstream 1.0kb downstream 4000 true scaffold_3: 42767991-42771990 Setaria italica
Seita.3G334300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42770991-42771990 Setaria italica
Seita.3G334300 2.0kb upstream 2.0kb upstream 5000 true scaffold_3: 42765991-42770990 Setaria italica
Seita.3G334300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42765991-42767990 Setaria italica
Seita.3G334300 2.0kb downstream 2.0kb downstream 5000 true scaffold_3: 42767991-42772990 Setaria italica
Seita.3G334300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42770991-42772990 Setaria italica
Seita.3G334300 5.0kb upstream 5.0kb upstream 8000 true scaffold_3: 42762991-42770990 Setaria italica
Seita.3G334300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42762991-42767990 Setaria italica
Seita.3G334300 5.0kb downstream 5.0kb downstream 8000 true scaffold_3: 42767991-42775990 Setaria italica
Seita.3G334300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42770991-42775990 Setaria italica
Seita.3G334300 10.0kb upstream 10.0kb upstream 13000 true scaffold_3: 42757991-42770990 Setaria italica
Seita.3G334300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42757991-42767990 Setaria italica
Seita.3G334300 10.0kb downstream 10.0kb downstream 13000 true scaffold_3: 42767991-42780990 Setaria italica
Seita.3G334300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42770991-42780990 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189962 5267 Panicoideae View MSA
124576263 5269 Grass View MSA
122045597 5273 Angiosperm View MSA
121347704 5274 Embryophyte View MSA
123380604 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.519        
cufflinks 4.091        
cufflinks 2.898        
cufflinks 1.076        
cufflinks 3.114        
cufflinks 4.602        
cufflinks 6.455        
cufflinks 10.732       High
cufflinks 17.582     High High
cufflinks 2.467        
cufflinks 2.779        
cufflinks 0.998       Low
cufflinks 0.501       Low
cufflinks 9.764       High
cufflinks 0.785       Low
cufflinks 6.48        
cufflinks 1.204        
cufflinks 3.49        
cufflinks 1.193        
cufflinks 1.041       Low

0 Strain