Gene : Seita.3G334900 S. italica v2.2
Defline:  (1 of 14) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3349
Name:  ? Seita.3G334900 Secondary Identifier:  ? PAC:32710694
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G334900 0.5kb upstream 0.5kb upstream 5968 true scaffold_3: 42832146-42838113 Setaria italica
Seita.3G334900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 42837614-42838113 Setaria italica
Seita.3G334900 0.5kb downstream 0.5kb downstream 5968 true scaffold_3: 42831646-42837613 Setaria italica
Seita.3G334900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 42831646-42832145 Setaria italica
Seita.3G334900 1.0kb upstream 1.0kb upstream 6468 true scaffold_3: 42832146-42838613 Setaria italica
Seita.3G334900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42837614-42838613 Setaria italica
Seita.3G334900 1.0kb downstream 1.0kb downstream 6468 true scaffold_3: 42831146-42837613 Setaria italica
Seita.3G334900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 42831146-42832145 Setaria italica
Seita.3G334900 2.0kb upstream 2.0kb upstream 7468 true scaffold_3: 42832146-42839613 Setaria italica
Seita.3G334900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 42837614-42839613 Setaria italica
Seita.3G334900 2.0kb downstream 2.0kb downstream 7468 true scaffold_3: 42830146-42837613 Setaria italica
Seita.3G334900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 42830146-42832145 Setaria italica
Seita.3G334900 5.0kb upstream 5.0kb upstream 10468 true scaffold_3: 42832146-42842613 Setaria italica
Seita.3G334900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 42837614-42842613 Setaria italica
Seita.3G334900 5.0kb downstream 5.0kb downstream 10468 true scaffold_3: 42827146-42837613 Setaria italica
Seita.3G334900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 42827146-42832145 Setaria italica
Seita.3G334900 10.0kb upstream 10.0kb upstream 15468 true scaffold_3: 42832146-42847613 Setaria italica
Seita.3G334900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 42837614-42847613 Setaria italica
Seita.3G334900 10.0kb downstream 10.0kb downstream 15468 true scaffold_3: 42822146-42837613 Setaria italica
Seita.3G334900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 42822146-42832145 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189345 5267 Panicoideae View MSA
124582055 5269 Grass View MSA
122042693 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346514 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.963        
cufflinks 8.503        
cufflinks 3.454       Low
cufflinks 2.844       Low
cufflinks 4.578        
cufflinks 9.094        
cufflinks 18.162     High High
cufflinks 6.861        
cufflinks 11.738        
cufflinks 4.861        
cufflinks 7.177        
cufflinks 10.422        
cufflinks 6.83        
cufflinks 5.072        
cufflinks 6.564        
cufflinks 19.005     High High
cufflinks 6.278        
cufflinks 15.792     High High
cufflinks 5.034        
cufflinks 6.698        

0 Strain