Gene : Seita.3G340300 S. italica v2.2
Defline:  (1 of 2) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  3403
Name:  ? Seita.3G340300 Secondary Identifier:  ? PAC:32712385
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Sequence Feature Displayer

Ontology Annotation Displayer

17 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-162 Setaria italica pathologic  
Sitalica PWY-7176 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7196 Setaria italica pathologic  
Sitalica PWY-7197 Setaria italica pathologic  
Sitalica PWY-7200 Setaria italica pathologic  
Sitalica PWY-7205 Setaria italica pathologic  
Sitalica PWY-7208 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  
Sitalica PWY-7221 Setaria italica pathologic  
Sitalica PWY-7224 Setaria italica pathologic  
Sitalica PWY-7226 Setaria italica pathologic  
Sitalica PWY-7227 Setaria italica pathologic  
Sitalica PWY-7228 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G340300 0.5kb upstream 0.5kb upstream 4310 true scaffold_3: 43675907-43680216 Setaria italica
Seita.3G340300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 43679717-43680216 Setaria italica
Seita.3G340300 0.5kb downstream 0.5kb downstream 4310 true scaffold_3: 43675407-43679716 Setaria italica
Seita.3G340300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 43675407-43675906 Setaria italica
Seita.3G340300 1.0kb upstream 1.0kb upstream 4810 true scaffold_3: 43675907-43680716 Setaria italica
Seita.3G340300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 43679717-43680716 Setaria italica
Seita.3G340300 1.0kb downstream 1.0kb downstream 4810 true scaffold_3: 43674907-43679716 Setaria italica
Seita.3G340300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 43674907-43675906 Setaria italica
Seita.3G340300 2.0kb upstream 2.0kb upstream 5810 true scaffold_3: 43675907-43681716 Setaria italica
Seita.3G340300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 43679717-43681716 Setaria italica
Seita.3G340300 2.0kb downstream 2.0kb downstream 5810 true scaffold_3: 43673907-43679716 Setaria italica
Seita.3G340300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 43673907-43675906 Setaria italica
Seita.3G340300 5.0kb upstream 5.0kb upstream 8810 true scaffold_3: 43675907-43684716 Setaria italica
Seita.3G340300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 43679717-43684716 Setaria italica
Seita.3G340300 5.0kb downstream 5.0kb downstream 8810 true scaffold_3: 43670907-43679716 Setaria italica
Seita.3G340300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 43670907-43675906 Setaria italica
Seita.3G340300 10.0kb upstream 10.0kb upstream 13810 true scaffold_3: 43675907-43689716 Setaria italica
Seita.3G340300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 43679717-43689716 Setaria italica
Seita.3G340300 10.0kb downstream 10.0kb downstream 13810 true scaffold_3: 43665907-43679716 Setaria italica
Seita.3G340300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 43665907-43675906 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195967 5267 Panicoideae View MSA
124571700 5269 Grass View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.059        
cufflinks 7.878        
cufflinks 1.198       Low
cufflinks 1.124       Low
cufflinks 5.964        
cufflinks 8.187        
cufflinks 14.788     High High
cufflinks 32.081     High High
cufflinks 39.808     High High
cufflinks 9.956        
cufflinks 6.147        
cufflinks 2.723        
cufflinks 3.225        
cufflinks 2.143        
cufflinks 3.208        
cufflinks 6.005        
cufflinks 4.311        
cufflinks 2.416        
cufflinks 1.561       Low
cufflinks 3.706        

0 Strain